PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM99010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 435aa MW: 49452.9 Da PI: 8.9669 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.3e-18 | 8 | 96 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +l+ + +l+s++l++p +f++++g + s+ tl+ ++g +W++ l +k ++r+++ +GW++Fv+ + +g f+vF+++g+s+f v++f+ KHM99010.1 8 KLVLPTTLQSRQLRIPDNFLRKYGTQ--LSTIATLTVPDGSVWRIGL--KKADNRILFVDGWQDFVQHYSIGVGYFLVFMYEGNSSF--IVHIFN 96 555677888889***********966..9999***************..*************************************9..999986 PP | |||||||
2 | B3 | 59.2 | 7e-19 | 301 | 392 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 vl ps+ + ++++lp fae++ +g++ ++l+ ++gr+W+v++ yr+++ l++GW eF +n+L egD++vF+l +++e l v+vfr KHM99010.1 301 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFRV 392 78899******************876743...59999999********665555..66************************99999999**99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-24 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.5E-23 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-19 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.606 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-16 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-16 | 8 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-24 | 290 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-24 | 291 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.30E-22 | 296 | 391 | No hit | No description |
SMART | SM01019 | 3.7E-19 | 298 | 393 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.099 | 298 | 393 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-17 | 301 | 391 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MPRPCFHKLV LPTTLQSRQL RIPDNFLRKY GTQLSTIATL TVPDGSVWRI GLKKADNRIL 60 FVDGWQDFVQ HYSIGVGYFL VFMYEGNSSF IVHIFNLSTS EVNYQSAIRN RNEGSCLANY 120 HHIFDEMEDV DSLDLSDLSP QYLTPGSLQN KGCVGSVDQL TPGKSHTPAL QNLFNGGSKL 180 NRINWGDGGS AFSSKNANSQ GNQSTRDIGV QFNANEFKRS TEELKLRYSN EETVNKTAKK 240 KRKSEPYGEE PSGENEEEAE MRYRFYESAS ARKRTVTAEE RERAINASKT FEPTNPFCRV 300 VLRPSYLYRG CIMYLPSCFA EKNLNGVSGF IKLQLSNGRQ WSVRCLYRGG RAKLSQGWFE 360 FTVENNLGEG DVCVFELLRT KEVVLQVTVF RVTEDAGLLN QPPMMQQQHI PNMSHTKLLN 420 PHLQHRVSTT KLIRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-72 | 264 | 394 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-72 | 264 | 394 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM99010.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094686 | 0.0 | BT094686.1 Soybean clone JCVI-FLGm-24P12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555681.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_028222197.1 | 0.0 | B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Swissprot | Q8L3W1 | 1e-125 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A0B2NPL0 | 0.0 | A0A0B2NPL0_GLYSO; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | I1ND23 | 0.0 | I1ND23_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G01130.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-123 | B3 family protein |
Publications ? help Back to Top | |||
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