PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM98816.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 425aa    MW: 47103.5 Da    PI: 8.4443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM98816.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.8e-33130187260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK+vkgse+prsYY+Ct+ +C vkkkver+  d++++ei+Y+g+Hnhek
  KHM98816.1 130 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCVVKKKVERAP-DGHITEIIYKGQHNHEK 187
                 8****************************************.***************85 PP
2WRKY1079.3e-34311369159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++ dpk+v++tYeg+Hnh+
  KHM98816.1 311 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASMDPKAVITTYEGKHNHD 369
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-28121189IPR003657WRKY domain
PROSITE profilePS5081123.606124188IPR003657WRKY domain
SuperFamilySSF1182909.15E-26128188IPR003657WRKY domain
SMARTSM007749.7E-36129187IPR003657WRKY domain
PfamPF031069.6E-25130186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-37296371IPR003657WRKY domain
SuperFamilySSF1182902.88E-29303371IPR003657WRKY domain
PROSITE profilePS5081138.882306371IPR003657WRKY domain
SMARTSM007742.2E-39311370IPR003657WRKY domain
PfamPF031062.2E-26312369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNLVIARSPV FTVPPGLSPS GFLNSPGFFS PQSPFGMSHQ QALAQVTAQA VLAQSHMHMQ  60
ADYQMPAVTA PTEPPVRQLS FALNEASEQQ VVSCVSSVSE PRNAQLEAPE LSQADKKYQP  120
SSQAIDKPAD DGYNWRKYGQ KQVKGSEYPR SYYKCTHLNC VVKKKVERAP DGHITEIIYK  180
GQHNHEKPQA NRRAKDNSDS NGNVTVQPKS ESNSQGWVGQ LNKFSEKIPD SSVAKSDQTS  240
NQGAPPRQLL PGSSESEEVG DVDNREEADD GEPNPKRRQN TDVGVSEVPL SQKTVTEPKI  300
IVQTRSEVDL LDDGYRWRKY GQKVVKGNPH PRSYYKCTSA GCNVRKHVER ASMDPKAVIT  360
TYEGKHNHDV PAARNSSHNT ASSNSMPLKP HNVVPEKHPL LKDMDFGSTD QRPVHLRLKE  420
EQIIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-40130372878Probable WRKY transcription factor 4
2lex_A3e-40130372878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM98816.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753550.0EU375355.1 Glycine max transcription factor (WRKY4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237655.20.0transcription factor
RefseqXP_028244947.10.0probable WRKY transcription factor 4
SwissprotQ9ZQ701e-124WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLB0LUS40.0B0LUS4_SOYBN; Transcription factor WRKY4
STRINGGLYMA08G26230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-115WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]