PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM98740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 31955.8 Da PI: 8.0002 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00043 | 154 | 190 | 14 | 55 |
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ +++ +L +l+ + +K + a++L +A+ YI+ Lq KHM98740.1 154 EKLGDRITTLHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 190 56778899999999887.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.944 | 140 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.11E-10 | 151 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-7 | 152 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.12E-5 | 152 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MMVDNPNWWS MHQQPSLIPP QYVFPPSSIP FNSLTENQEP PQSWSQLFFT GLPGEEEKLG 60 PKKLENWNVQ DLNTASRVPF LDVIRQQVSQ RGNLYDHGPS WSHMVPVSSP VSCVTSFSSN 120 NILDFTYNKS DHRRNLQQDQ ISKCNSTATA VRKEKLGDRI TTLHQLVSPF GKTDTASVLL 180 EAIGYIRFLQ GQIEALSSPY LGSASKNMRN QQSVHGERNS VPEDPGQLLN DNNIGLKRKG 240 APNQDAEDHK AKDLKSRGLC LVPVSCTQNM HVGSYYWAPA YGRGF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM98740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235745 | 1e-109 | AC235745.1 Glycine max strain Williams 82 clone GM_WBb0152I20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597160.1 | 0.0 | transcription factor bHLH68 | ||||
Refseq | XP_028203266.1 | 0.0 | transcription factor bHLH68-like | ||||
Swissprot | Q8S3D1 | 1e-50 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A0B2NNY1 | 0.0 | A0A0B2NNY1_GLYSO; Transcription factor bHLH68 | ||||
STRING | GLYMA15G02020.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1223 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 3e-51 | bHLH family protein |
Publications ? help Back to Top | |||
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