PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM98729.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 180aa    MW: 20058.6 Da    PI: 9.7024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM98729.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-194596156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                ++y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g+
  KHM98729.1 45 PDYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKGH 96
                68*****998.**********843...6************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-134596IPR001471AP2/ERF domain
CDDcd000182.51E-3045104No hitNo description
SMARTSM003807.3E-3546109IPR001471AP2/ERF domain
PROSITE profilePS5103222.08946103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3146104IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2147104IPR016177DNA-binding domain
PRINTSPR003671.4E-94758IPR001471AP2/ERF domain
PRINTSPR003671.4E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTETTRCHET PSSSTSNSST SKPPKRNKTE KQSKAKRNRD PTKHPDYHGV RMRNWGKWVS  60
EIREPRKKSR IWLGTFATPE MAARAHDVAA LSIKGHTAIL NFPNIVNMLP RPVTCAPRDI  120
QAAATAAASM VKFDPVTQSS DSETPESSEL SEIVELPNIE DSSFDSVDSI LQWRWGALVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-20421081077Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM98729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424637.13e-85PREDICTED: dehydration-responsive element-binding protein 3
SwissprotQ9LYD33e-51DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0B2NNY01e-130A0A0B2NNY0_GLYSO; Dehydration-responsive element-binding protein 3
STRINGGLYMA13G43210.11e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]