PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.N024800.1
Common NameB456_N024800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 131aa    MW: 14728.9 Da    PI: 10.6075
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.N024800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-092223656
                     HCTS-HHHHHHHHHHHHHHHH CS
         Homeobox 36 klgLterqVkvWFqNrRakek 56
                     +l+L  rqV +WFqNrRa+++
  Gorai.N024800.1  2 QLNLRPRQVEIWFQNRRARKR 22
                     8******************98 PP
2HD-ZIP_I/II80.42.8e-262573591
      HD-ZIP_I/II 35 eLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
                     +L+l+prqv++WFqnrRAR ++kq+E+d+e+Lkr++d+l+ee +rL+kev+eLr +l
  Gorai.N024800.1  2 QLNLRPRQVEIWFQNRRARKRLKQTEVDCEYLKRCCDNLTEESRRLQKEVQELR-AL 57
                     89***************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.499124IPR001356Homeobox domain
PfamPF000463.8E-7222IPR001356Homeobox domain
SuperFamilySSF466894.71E-8233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-8227IPR009057Homeodomain-like
CDDcd000862.67E-5225No hitNo description
PfamPF021833.8E-112458IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.8E-242467IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MQLNLRPRQV EIWFQNRRAR KRLKQTEVDC EYLKRCCDNL TEESRRLQKE VQELRALKLS  60
PQLYTHINPP TTLTMCPSCE RVAVASSSSS SLAASSAPNS KHQRPVPASS WAALPLPVTH  120
RPLNAPASRP *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466437.11e-89PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP929532e-48ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLA0A0D2U9C74e-88A0A0D2U9C7_GOSRA; Uncharacterized protein
STRINGGorai.N024800.17e-89(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.14e-48homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  3. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  4. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]