PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.N024000.3

Common Name

B456_N024000, LOC105785040

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HRT-like

Protein Properties

Length: 374aa MW: 41855 Da PI: 9.6276

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.N024000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	26.7	9.2e-09	221	245	1	26
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeH 26 iCG++++dG +C+r Pv g+ RC++H Gorai.N024000.3 221 ICGAATSDGAPCER-PVSGNGRCWQH 245 8*********97.9******** PP
2	HRT-like	25.7	2e-08	316	340	1	26
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeH 26 iCG+++++G +C+r Pv g+ RC++H Gorai.N024000.3 316 ICGATTDNGAPCER-PVSGNGRCWQH 340 8*********97.9******** PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MVLIVVEDEI PVHVDRSNRE DHKKTDHDSY FSEWKLLICP HGWKNGKGGA VTRYRLENLP 60 QSFGPGTYEL AVCKLPSRDR HGKLEPGLVV YVGEAENIRV RLQQYGRDGT HLCRKNGFRE 120 KKCRLFDPIF ARGCCIIYRW ASMKSKAAAQ RTEARLLEKY DYAWNIGSNG ARRPNDILRK 180 LDKHVSNKRH LPIKIKSNKQ VNGRCRRHLD HRGGGGDITY ICGAATSDGA PCERPVSGNG 240 RCWQHSNYGR SSSSNKRHVP VKIKSNKQVN GRCRRHLNYG GDGGSSFTSR NLNYGCYDSS 300 FTPRWLDHGG DDIILICGAT TDNGAPCERP VSGNGRCWQH LDYSSSSSSS GGSSSSSGCF 360 TCGTFNYDPQ WFF*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MVLIVVEDEI PVHVDRSNRE DHKKTDHDSY FSEWKLLICP HGWKNGKGGA VTRYRLENLP  60
QSFGPGTYEL AVCKLPSRDR HGKLEPGLVV YVGEAENIRV RLQQYGRDGT HLCRKNGFRE  120
KKCRLFDPIF ARGCCIIYRW ASMKSKAAAQ RTEARLLEKY DYAWNIGSNG ARRPNDILRK  180
LDKHVSNKRH LPIKIKSNKQ VNGRCRRHLD HRGGGGDITY ICGAATSDGA PCERPVSGNG  240
RCWQHSNYGR SSSSNKRHVP VKIKSNKQVN GRCRRHLNYG GDGGSSFTSR NLNYGCYDSS  300
FTPRWLDHGG DDIILICGAT TDNGAPCERP VSGNGRCWQH LDYSSSSSSS GGSSSSSGCF  360
TCGTFNYDPQ WFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527482	1e-48	HQ527482.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BJYPK simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466423.1	0.0	PREDICTED: uncharacterized protein LOC105785040 isoform X1
TrEMBL	A0A0D2VLY3	0.0	A0A0D2VLY3_GOSRA; Uncharacterized protein
STRING	Gorai.N024000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-44	effector of transcription2

Link Out ? help Back to Top
Phytozome	Gorai.N024000.3
Entrez Gene	105785040

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]