PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.N023400.1

Common Name

B456_N023400, LOC105785034

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 366aa MW: 39735.1 Da PI: 9.737

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.N023400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.8	4.6e-39	47	171	2	119
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa+ ++tgt++++a+++ + s +ss+s+ s++ Gorai.N023400.1 47 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVFAATGTGTIPANFTsLNISLRSSGSSMSAShlrnty 140 789******************************************************************9998666666666644444555566 PP TCP 89 ................kaaksaakskksqksaasalnlak.esrakar 119 + ++n+ + +s+++++ Gorai.N023400.1 141 fnpnfttqqlrtrsewD-----------------QRNVLDdSSQQQQQ 171 43222222222222220.................23333313333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.1E-39	51	170	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.001	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MIMDENGIRR PNFPLQLLEK KEQPRSDPAD VDTSSKPTLE PPSKKPPPKR TSTKDRHTKV 60 EGRGRRIRMP ATCAARVFQL TRELGHKSDG ETIEWLLQQA EPAVFAATGT GTIPANFTSL 120 NISLRSSGSS MSASHLRNTY FNPNFTTQQL RTRSEWDQRN VLDDSSQQQQ QQRRVLFPGV 180 ALSSEDSLTF PGTSSTTLNA FLQAKQEIRD AEAADTSIGK RRRPEQQESP QNQVGSYLIQ 240 SNTGSIPTSH NPIPATFWIG NQVISGSGTG DPMWTFPSTN NTNMYRGTMS SGVHFMNLAA 300 PMALLPAQQF GSGIGAGGSS VTDTHLSMLA SLNAYRPVPG IGVSEPPAGG SHQHHGGENR 360 HDSTS*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MIMDENGIRR PNFPLQLLEK KEQPRSDPAD VDTSSKPTLE PPSKKPPPKR TSTKDRHTKV  60
EGRGRRIRMP ATCAARVFQL TRELGHKSDG ETIEWLLQQA EPAVFAATGT GTIPANFTSL  120
NISLRSSGSS MSASHLRNTY FNPNFTTQQL RTRSEWDQRN VLDDSSQQQQ QQRRVLFPGV  180
ALSSEDSLTF PGTSSTTLNA FLQAKQEIRD AEAADTSIGK RRRPEQQESP QNQVGSYLIQ  240
SNTGSIPTSH NPIPATFWIG NQVISGSGTG DPMWTFPSTN NTNMYRGTMS SGVHFMNLAA  300
PMALLPAQQF GSGIGAGGSS VTDTHLSMLA SLNAYRPVPG IGVSEPPAGG SHQHHGGENR  360
HDSTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527504	1e-118	HQ527504.1 Gossypium herbaceum clone NBRI_C_EYT27PB01AVN7Y simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012466418.1	0.0	PREDICTED: transcription factor TCP15-like
TrEMBL	A0A0D2WAQ7	0.0	A0A0D2WAQ7_GOSRA; Uncharacterized protein
STRING	Gorai.N023400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3915	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-39	TCP family protein

Link Out ? help Back to Top
Phytozome	Gorai.N023400.1
Entrez Gene	105785034

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]