PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.N002600.5
Common NameB456_N002600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 172aa    MW: 19468.2 Da    PI: 9.5434
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.N002600.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.53.6e-3163151291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      fY++YA++vGF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw+vt++++eHnH+l+p
  Gorai.N002600.5  63 FYDAYATRVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWVVTRFVKEHNHQLVP 151
                      9*******************************************99.9****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2963151IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MPCSSLDSNL DLQSMGENAS MEEPEAEPIQ NSDGKEFVSV EGTSDEEPYV GKEFESEEAA  60
KVFYDAYATR VGFIMRVDAF RRSMRDGKVV WRRLVCNKEG FRKLRPRRSE NRKPRAITRE  120
GCKAMIVVKK EKTGKWVVTR FVKEHNHQLV PIPVNGRRSM LLSQTPSIGG V*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466033.11e-122PREDICTED: protein FAR1-RELATED SEQUENCE 1
SwissprotQ9SZL85e-32FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0D2SLD81e-123A0A0D2SLD8_GOSRA; Uncharacterized protein
STRINGGorai.N002600.11e-121(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.15e-63FAR1 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]