PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.N002600.1

Common Name

B456_N002600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 244aa MW: 28283.3 Da PI: 8.4755

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.N002600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.3	8.3e-31	63	151	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YA++vGF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw+vt++++eHnH+l+p Gorai.N002600.1 63 FYDAYATRVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWVVTRFVKEHNHQLVP 151 9*****************************************99.9**************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-29	63	151	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MPCSSLDSNL DLQSMGENAS MEEPEAEPIQ NSDGKEFVSV EGTSDEEPYV GKEFESEEAA 60 KVFYDAYATR VGFIMRVDAF RRSMRDGKVV WRRLVCNKEG FRKLRPRRSE NRKPRAITRE 120 GCKAMIVVKK EKTGKWVVTR FVKEHNHQLV PIPVNGRRSM LLSQTPLELQ TWKMVMDEKD 180 VKIRELTAEL QRERKRSAAI QEQLDMVLRE MEEHSNHLSR NIDDIVQSLR EIESNPVALF 240 KRQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016745772.1	1e-179	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X1
TrEMBL	A0A0D2U8C6	1e-179	A0A0D2U8C6_GOSRA; Uncharacterized protein
STRING	Gorai.N002600.1	1e-180	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-94	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Gorai.N002600.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]