PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G268200.1

Common Name

B456_013G268200, LOC105781742

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 197aa MW: 21060.7 Da PI: 8.746

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G268200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.8	8.1e-34	35	110	3	78
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaess 78 kk++++++h+kv+gRdRR+Rl+ caar+F+L++eLG+++d++ti WLl+qa+p+i ++tgt+ s s + ++ Gorai.013G268200.1 35 NKKTTTKDRHAKVDGRDRRIRLPTVCAARIFQLTRELGLKTDGETIAWLLRQAEPSIVAATGTGVSETSTTpgP--TN 110 59*************************************************************66666555331..11 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-27	38	114	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.841	40	94	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MASSKNMGLE MALSTNPSTK KPRTGSANKA STSKNKKTTT KDRHAKVDGR DRRIRLPTVC 60 AARIFQLTRE LGLKTDGETI AWLLRQAEPS IVAATGTGVS ETSTTPGPTN NNSTNTGLVP 120 FSTGSDSPLA TSDYTPCLTF LQEPDRMLLK NSGDVSRGEP SLPPLEFDFD LEFSAHEMAM 180 FQSVAAAANH DKEGKI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269\|PubMed:19286557}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461704.1	1e-143	PREDICTED: transcription factor PCF1-like
Swissprot	Q9FTA2	8e-31	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A0D2SJY4	1e-142	A0A0D2SJY4_GOSRA; Uncharacterized protein
STRING	Gorai.013G268200.1	1e-142	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-29	TCP family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G268200.1
Entrez Gene	105781742

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]