PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G266400.1

Common Name

B456_013G266400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 317aa MW: 35398.5 Da PI: 7.6703

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G266400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.7	4.6e-12	236	279	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r rrk+kNRe+A rsR+RK+a+ eL +kv Le+ N +Lk e Gorai.013G266400.1 236 RRLRRKIKNRESAARSRARKQAYHNELVNKVSRLEEDNLKLKRE 279 5889**********************************999977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.4E-8	232	297	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.542	234	279	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-10	236	281	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.77E-9	236	282	No hit	No description
CDD	cd14707	1.97E-17	236	290	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.0E-11	236	281	No hit	No description
PROSITE pattern	PS00036	0	239	254	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MGIQTMGSQS NGQQSLLQPS PLVRQNSWYS LTLNEVENQL GNLGKPLGSM NLDELLDNVW 60 STELNPPLGM NNTESISSSS SSLQRQASLT LARALSGKTV DQVWSEIQQG QKRRYGEGIK 120 DQEREATLGE TTLEDFLVQA GLFVAETSLD PTMEFDNTRQ QSLPHQFGLS PTPSIGTLSD 180 TPMTRQKRDV FQKSIESSLP QQFGLSPTPS IGTLSDTPMT GRKRDAQDAF EKSIERRLRR 240 KIKNRESAAR SRARKQAYHN ELVNKVSRLE EDNLKLKREK EFDTKSQCET SETRIPAHAK 300 GPDAAHVDNY MREKTS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462031.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_012462032.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	A0A0D2VKL3	0.0	A0A0D2VKL3_GOSRA; Uncharacterized protein
STRING	Gorai.013G266400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16714	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-52	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Gorai.013G266400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]