PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G254100.5

Common Name

B456_013G254100, LOC105783340

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 440aa MW: 49301.4 Da PI: 9.2151

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G254100.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.8	8.7e-09	3	29	31	57
HHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 31 eeLAkklgLterqVkvWFqNrRakekk 57 ++LA ++gLte+q++ WF+ rR k+k+ Gorai.013G254100.5 3 ARLAVQIGLTEKQISSWFCHRRLKDKR 29 79***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.418	1	30	IPR001356	Homeobox domain
CDD	cd00086	3.22E-6	1	30	No hit	No description
SuperFamily	SSF46689	2.61E-7	2	36	IPR009057	Homeodomain-like
Pfam	PF00046	2.6E-6	2	29	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-8	2	30	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	5	28	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MKARLAVQIG LTEKQISSWF CHRRLKDKRR DESYPNGRQD HSSGVIQDRG SGLRQDSCGS 60 IKQGDYRNID LREVESRRIY GQEFPAADLK YECRSHQNPY DDRMEDTSSE SNLSLNDQPE 120 NGAITQINPR STKSIGYKPS GYLKVKGEIE NSAITAVKRQ LGRHYKEDGP LLGIQFDSLP 180 PGAFEFPSSS PVNEPMYVGD TRQTHSPDTS GVIKQPSNIV NVHNSKISSQ DSDMEGAKFN 240 TVQGSERRDR KSHHQLKHKS SLDIYNDSTK KSTLTDSKRI KTSSKLAVEK MGSDSFPNHP 300 SPYGMKVSDE QEKPWLHDDD NHTYKAPKNE NLSRTSNLIR GYNESSSTER GSSARMGKVE 360 KLGGEWKTKK EYPVTVKTNL KNKLRVSKQV NAQHPQQDFA AYAPHARLPL LTNQTKGSSM 420 DVPSSFSEDE TAETDSSSD*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MKARLAVQIG LTEKQISSWF CHRRLKDKRR DESYPNGRQD HSSGVIQDRG SGLRQDSCGS  60
IKQGDYRNID LREVESRRIY GQEFPAADLK YECRSHQNPY DDRMEDTSSE SNLSLNDQPE  120
NGAITQINPR STKSIGYKPS GYLKVKGEIE NSAITAVKRQ LGRHYKEDGP LLGIQFDSLP  180
PGAFEFPSSS PVNEPMYVGD TRQTHSPDTS GVIKQPSNIV NVHNSKISSQ DSDMEGAKFN  240
TVQGSERRDR KSHHQLKHKS SLDIYNDSTK KSTLTDSKRI KTSSKLAVEK MGSDSFPNHP  300
SPYGMKVSDE QEKPWLHDDD NHTYKAPKNE NLSRTSNLIR GYNESSSTER GSSARMGKVE  360
KLGGEWKTKK EYPVTVKTNL KNKLRVSKQV NAQHPQQDFA AYAPHARLPL LTNQTKGSSM  420
DVPSSFSEDE TAETDSSSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	30	RRLKDKRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464198.1	0.0	PREDICTED: uncharacterized protein LOC105783340
Refseq	XP_012464199.1	0.0	PREDICTED: uncharacterized protein LOC105783340
TrEMBL	A0A0D2VIJ2	0.0	A0A0D2VIJ2_GOSRA; Uncharacterized protein
STRING	Gorai.013G254100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-62	HB-other family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G254100.5
Entrez Gene	105783340

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]