PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G254100.1
Common NameB456_013G254100, LOC105783340
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 487aa    MW: 54671.3 Da    PI: 8.3925
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G254100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-182176257
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        +kRt  t+ ql +Lee++++++ ps e++++LA ++gLte+q++ WF+ rR k+k+
  Gorai.013G254100.1 21 KKRTFKTPAQLLALEEAYKEQKFPSDEMKARLAVQIGLTEKQISSWFCHRRLKDKR 76
                        89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-19477IPR009057Homeodomain-like
PROSITE profilePS5007116.2441777IPR001356Homeobox domain
SMARTSM003895.3E-181981IPR001356Homeobox domain
SuperFamilySSF466898.55E-172077IPR009057Homeodomain-like
PfamPF000465.8E-162176IPR001356Homeobox domain
CDDcd000861.19E-162177No hitNo description
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEDSGEQQTE ENKGSLDVVN KKRTFKTPAQ LLALEEAYKE QKFPSDEMKA RLAVQIGLTE  60
KQISSWFCHR RLKDKRRDES YPNGRQDHSS GVIQDRGSGL RQDSCGSIKQ GDYRNIDLRE  120
VESRRIYGQE FPAADLKYEC RSHQNPYDDR MEDTSSESNL SLNDQPENGA ITQINPRSTK  180
SIGYKPSGYL KVKGEIENSA ITAVKRQLGR HYKEDGPLLG IQFDSLPPGA FEFPSSSPVN  240
EPMYVGDTRQ THSPDTSGVI KQPSNIVNVH NSKISSQDSD MEGAKFNTVQ GSERRDRKSH  300
HQLKHKSSLD IYNDSTKKST LTDSKRIKTS SKLAVEKMGS DSFPNHPSPY GMKVSDEQEK  360
PWLHDDDNHT YKAPKNENLS RTSNLIRGYN ESSSTERGSS ARMGKVEKLG GEWKTKKEYP  420
VTVKTNLKNK LRVSKQVNAQ HPQQDFAAYA PHARLPLLTN QTKGSSMDVP SSFSEDETAE  480
TDSSSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16977RRLKDKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464198.10.0PREDICTED: uncharacterized protein LOC105783340
RefseqXP_012464199.10.0PREDICTED: uncharacterized protein LOC105783340
TrEMBLA0A0D2VIJ20.0A0A0D2VIJ2_GOSRA; Uncharacterized protein
STRINGGorai.013G254100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122022531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.17e-76HB-other family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]