PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G249100.1
Common NameB456_013G249100, LOC105781732
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 357aa    MW: 40237.1 Da    PI: 7.8649
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G249100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.31.1e-094693154
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                        +++kGV    ++g W A+I+       + +r++lg+f ++ eAa a++ a+ kl+
  Gorai.013G249100.1 46 PKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSESEAAMAYDSAAVKLR 93
                        6999**6.666899****999......44**********88**********9998 PP
2B3871.6e-27172268184
                         EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                         f+k+ltpsdv+k++rlv+pkk+a ++               gg+  e+++l+++d+   +W+++++y+k+s+++v+t+GW++Fvk+++L+e
  Gorai.013G249100.1 172 FQKELTPSDVGKLNRLVIPKKYAVKYfphicetdrqvsaagGGV--EDIELVFYDKLMVTWKFRYCYWKSSQSFVFTRGWSRFVKEKKLNE 260
                         99*****************************9999999976555..789****************************************** PP

                         T-EEEEEE CS
                  B3  77 gDfvvFkl 84 
                         +D+v+F+ 
  Gorai.013G249100.1 261 KDTVTFYS 268
                         ******92 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.39E-2346104No hitNo description
PfamPF008472.0E-44693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1647102IPR001471AP2/ERF domain
PROSITE profilePS5103217.01647102IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1547103IPR016177DNA-binding domain
SMARTSM003802.7E-1947108IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.1E-31170273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-26170272IPR015300DNA-binding pseudobarrel domain
CDDcd100172.55E-24171267No hitNo description
PfamPF023621.7E-24172268IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335172288IPR003340B3 DNA binding domain
SMARTSM010197.7E-20172277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVEDDSSTVL NTKLTVLAAE TSDSGNSGYK FRPGKRSRYD QIGSLPKFKG VVPQQNGHWG  60
AQIYANHQRI WLGTFKSESE AAMAYDSAAV KLRSGDSHRN FPWTEQNIQE PDFQSLYSTE  120
DVLNMIRDGS YQAKFEDFVK ILSKRDGKLN TSNNVNKKLV HGDKQFPCMQ LFQKELTPSD  180
VGKLNRLVIP KKYAVKYFPH ICETDRQVSA AGGGVEDIEL VFYDKLMVTW KFRYCYWKSS  240
QSFVFTRGWS RFVKEKKLNE KDTVTFYSCE CSGEDQNGKS FFLIDVNYNG ENGLGSSAAA  300
LEEEDRRDDD LAVGLEFNSG STTKGYSNKA IEGFENGGRN VKQKSVTLFG VQINLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2617127613108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461694.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-107RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0D2U6M70.0A0A0D2U6M7_GOSRA; Uncharacterized protein
STRINGGorai.013G249100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-109RAV family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]