PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G245600.1
Common NameB456_013G245600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 527aa    MW: 59735 Da    PI: 9.5924
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G245600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.6e-1827818100
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
                  B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                         +p+kf++++g++   s  ++le +sg  W+v+l   k+++r+ l++GW+eF++   L+ g fvvF+++g++ f  +v +f+ks
  Gorai.013G245600.1   2 IPRKFVRKYGNQ--LSSPVKLELPSGAIWQVEL--AKTDERVRLQNGWREFAEHYSLELGSFVVFRYEGNDHF--HVLIFDKS 78 
                         9********988..5567***************..**********************************9999..*****985 PP
2B368.87.4e-22176260186
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f +v+ ps+v  ++r+ +p +fa+++  ++++   ltl +++g++W  kl y  +kk++++ l +GW+eFv++n+L++gD++vF+l++
  Gorai.013G245600.1 176 FMTVMQPSYVRGTCRMFIPSDFARKFLTVHKS--NLTLCNSTGKTWHAKLYYlaNKKPNAH-LYGGWREFVEDNHLNVGDICVFELIK 260
                         8899**********************666444..6***************88988888887.677********************986 PP
3B355.98e-18423518398
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          v  ps+v + + + +p +f +++ +k   s +++l+  +grsW+v++  r++s +   ++ +k W +F+ +n+ ++gD++vF+l+++++ 
  Gorai.013G245600.1 423 VVIHPSHVRSCSTVHIPEEFGKRYLKK---SGEMMLRVADGRSWNVEYERRGRSTSrkaVFEGKSWGQFAMDNEFEVGDVCVFELMNENGN 510
                         5667899999999***********533...448***************774444445568889**********************987666 PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                          l v ++r
  Gorai.013G245600.1 511 LLEVVIHR 518
                         56666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.777178IPR003340B3 DNA binding domain
PfamPF023622.9E-14277IPR003340B3 DNA binding domain
CDDcd100171.31E-17276No hitNo description
SuperFamilySSF1019361.06E-21278IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-9278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-22278IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-23170261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-25171269IPR015300DNA-binding pseudobarrel domain
CDDcd100178.74E-23174260No hitNo description
PfamPF023621.2E-19176260IPR003340B3 DNA binding domain
PROSITE profilePS5086314.226176274IPR003340B3 DNA binding domain
SMARTSM010191.8E-13176274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19414518IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-19416516IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-21419518No hitNo description
PROSITE profilePS5086313.958421519IPR003340B3 DNA binding domain
SMARTSM010192.5E-17421520IPR003340B3 DNA binding domain
PfamPF023625.6E-16423518IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
GIPRKFVRKY GNQLSSPVKL ELPSGAIWQV ELAKTDERVR LQNGWREFAE HYSLELGSFV  60
VFRYEGNDHF HVLIFDKSAL EIEYPHTSTE GNDVSRKSKE KSHLPCPLPR KKMRIDSSNQ  120
HDQNSKLEVL SSGTSPDAQR NVKTKAFSCV QRLAANEKAH AVQIASAFES TENPVFMTVM  180
QPSYVRGTCR MFIPSDFARK FLTVHKSNLT LCNSTGKTWH AKLYYLANKK PNAHLYGGWR  240
EFVEDNHLNV GDICVFELIK YPEILMKAQI YPGVKNASKA RWQQSLGSIV SQVKNRILVS  300
DAEPNCQQSP SSSRESKDLT DSHIKTLDDS PLDQKTKKKL TRLSVQPCKM TRTSLSGSIQ  360
AKGIKHEKGK SLNFQYSTQE LGGDLFWKEV RCSEMSEPDP VYQKQRACTG GGAFRTSNPS  420
FSVVIHPSHV RSCSTVHIPE EFGKRYLKKS GEMMLRVADG RSWNVEYERR GRSTSRKAVF  480
EGKSWGQFAM DNEFEVGDVC VFELMNENGN LLEVVIHRKL LLIEIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1515327127140B3 domain-containing transcription factor VRN1
4i1k_B1e-1515327127140B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720614.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like
TrEMBLA0A0D2VJR00.0A0A0D2VJR0_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.013G245600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1837549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-39B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]