PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G241500.1

Common Name

B456_013G241500, LOC105783552

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 934aa MW: 101506 Da PI: 6.1099

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G241500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.8	1.4e-15	523	561	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YC+Cfaag +C+e C+C++C+N+ e Gorai.013G241500.1 523 CKRCNCKKSKCLKLYCDCFAAGIYCAEPCSCQGCFNRPE 561 89**********************************876 PP
2	TCR	47.8	2.8e-15	609	647	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s ClkkYCeC++a++ Cs C+Ce+CkN Gorai.013G241500.1 609 RHKRGCNCKRSMCLKKYCECYQANVGCSIGCRCEGCKNV 647 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.7E-17	521	562	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.042	522	649	IPR005172	CRC domain
Pfam	PF03638	1.6E-11	524	559	IPR005172	CRC domain
SMART	SM01114	3.8E-17	609	650	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.2E-11	611	646	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence Send to blast
MDSPEPTKSP IPSSSAAPSS SFSPVQESPF SNFISNLSPI KHDKVPHVAP RFLGLSSPPL 60 VFTSPRINTL KRPQSSNVEV SQNVKGDEQS TNRPGDLERS VSELHREMII DVKEDDTKDS 120 MSVQPSSSSG CVDEYLADPV EADCVNSAYS VNLNLKQSNN VLESSANGLP CSKNLESVDK 180 HYSGREAGAV QLLSGQSEKG LETFDIEPLK IKEDQHGGQG ISDGCRQIDS DMFDLSSQEK 240 ESKNLNPQKG VADDGYGCDG FLQLQPGSLQ MVQAYEGFAE NVGGVTDAPF YDTTHDLAAI 300 EHLRGMSRRC LQFGEPQPES TANCSSSPNL VNDVITSVPL ATSSKTEGLG SSHVDLSTSR 360 KRRLVNLSQL AINMIPQSYD NRSSLTVSKP SGIGLHLNSI FNDIPTDQGG TVSMKLAVDS 420 MGTEGIKSAS ITSCQSMENM ENCSDAFEKV STAPQDRTLE AKVSTIEGSA ASESLCTMES 480 IECHMTVNTK RKLSSGDGDI NKVFNQQSPK NKRKKLSESD EGCKRCNCKK SKCLKLYCDC 540 FAAGIYCAEP CSCQGCFNRP EYESTVLETR QQIESRNPLA FAPKIVQPVT EVPVNSREDG 600 NWKTPSSARH KRGCNCKRSM CLKKYCECYQ ANVGCSIGCR CEGCKNVYGK KEDYYVTEAI 660 VKRGVGELSE STVTVKKDFL HSELCNPHYL TPTTPSFEHS DHGKNASVSG LLPMRCLPSP 720 ESDPTNVSLA KSPRTSNTND ILLETSKENL YVGSYHDKVN YNNADNILAD DCHQTPLPNH 780 PSIIIDSSSS KPRELTNLSR LNLGPRSGCF TLGGSLRWRS SPITPKSPID KELQQLDSDG 840 GLYDILEDDT PEMLKDTSTP LKSVKASSPN GKRVSPPHKL HQLGSSSSGS LRSGRKFLLK 900 AVPSFPPLTP CIVSKGNSNE SRSYYEEDGS KDQ*

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence Send to blast

MDSPEPTKSP IPSSSAAPSS SFSPVQESPF SNFISNLSPI KHDKVPHVAP RFLGLSSPPL  60
VFTSPRINTL KRPQSSNVEV SQNVKGDEQS TNRPGDLERS VSELHREMII DVKEDDTKDS  120
MSVQPSSSSG CVDEYLADPV EADCVNSAYS VNLNLKQSNN VLESSANGLP CSKNLESVDK  180
HYSGREAGAV QLLSGQSEKG LETFDIEPLK IKEDQHGGQG ISDGCRQIDS DMFDLSSQEK  240
ESKNLNPQKG VADDGYGCDG FLQLQPGSLQ MVQAYEGFAE NVGGVTDAPF YDTTHDLAAI  300
EHLRGMSRRC LQFGEPQPES TANCSSSPNL VNDVITSVPL ATSSKTEGLG SSHVDLSTSR  360
KRRLVNLSQL AINMIPQSYD NRSSLTVSKP SGIGLHLNSI FNDIPTDQGG TVSMKLAVDS  420
MGTEGIKSAS ITSCQSMENM ENCSDAFEKV STAPQDRTLE AKVSTIEGSA ASESLCTMES  480
IECHMTVNTK RKLSSGDGDI NKVFNQQSPK NKRKKLSESD EGCKRCNCKK SKCLKLYCDC  540
FAAGIYCAEP CSCQGCFNRP EYESTVLETR QQIESRNPLA FAPKIVQPVT EVPVNSREDG  600
NWKTPSSARH KRGCNCKRSM CLKKYCECYQ ANVGCSIGCR CEGCKNVYGK KEDYYVTEAI  660
VKRGVGELSE STVTVKKDFL HSELCNPHYL TPTTPSFEHS DHGKNASVSG LLPMRCLPSP  720
ESDPTNVSLA KSPRTSNTND ILLETSKENL YVGSYHDKVN YNNADNILAD DCHQTPLPNH  780
PSIIIDSSSS KPRELTNLSR LNLGPRSGCF TLGGSLRWRS SPITPKSPID KELQQLDSDG  840
GLYDILEDDT PEMLKDTSTP LKSVKASSPN GKRVSPPHKL HQLGSSSSGS LRSGRKFLLK  900
AVPSFPPLTP CIVSKGNSNE SRSYYEEDGS KDQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	7e-18	526	647	14	121	Protein lin-54 homolog
5fd3_B	7e-18	526	647	14	121	Protein lin-54 homolog
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.3374	0.0	flower\| flowering

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464540.1	0.0	PREDICTED: CRC domain-containing protein TSO1-like
TrEMBL	A0A0D2U672	0.0	A0A0D2U672_GOSRA; Uncharacterized protein
STRING	Gorai.013G241500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15196	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	5e-62	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Gorai.013G241500.1
Entrez Gene	105783552

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]