PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G233700.1
Common NameB456_013G233700, LOC105783388
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 532aa    MW: 60793.9 Da    PI: 7.6854
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G233700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.8e-0690111527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C f++  G+C+ GdrC+F Hgp
  Gorai.013G233700.1  90 PCYFYFN-GFCNKGDRCSFLHGP 111
                         7999999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.221635IPR000571Zinc finger, CCCH-type
SMARTSM003560.058734IPR000571Zinc finger, CCCH-type
PfamPF156633.1E-11765No hitNo description
PROSITE profilePS501039.7793763IPR000571Zinc finger, CCCH-type
SMARTSM003560.933962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-685110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.18385112IPR000571Zinc finger, CCCH-type
SMARTSM003560.00686111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-690113IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEEQLLKRNT DCVYFLASPF TCKKGLDCEY RHSEVARLNP RDCWYWLAGN CINPTCGFRH  60
PPLDVHSQVP SESAALPYQC STAANKTNLP CYFYFNGFCN KGDRCSFLHG PHESTITVNS  120
LKTGALPLDH KTFVENDVGA VQTETHPNPS KTAPNSIKDT GVQLKTDLEE PVPKTMIKRS  180
VSPKTSVFEL EQAGFVSSQS LLLKEGITQT GSPICTDESL EEQLDDPFEP EEPEERWESS  240
EGFDVLVDNK SEDLDYGNDS EYQKDPEEEQ TDYFFSYDYE DSVQHETRYP DLEFSYDRDV  300
YDAYEGSDNE YIFNNPRNPF AHPGDKRRLD SMFSQKRRRL LPIKRSIDVD LRDYLSKRRV  360
VKGNPLKCLS RSEYSHLISR SLERPRRRSM GRKLSGRLAS KVGKHYIEST GGQGGFGNGT  420
NRRGWLKHLE PNRSIRRPYR EKRLPKRKSV SSEVSRNLIS RERKYEDAST AFTGPKTLAQ  480
IREEKRKTEE NGGKMRHSIV TASADFQGPK PLSEILKDKE RLAKKGTNFL S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325338KRRLDSMFSQKRRR
2335339KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464263.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X1
TrEMBLA0A0D2VJ970.0A0A0D2VJ97_GOSRA; Uncharacterized protein
STRINGGorai.013G233700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16432710
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]