PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G225300.1

Common Name

B456_013G225300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 182aa MW: 20987.1 Da PI: 9.8713

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G225300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.2	6.8e-24	74	118	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+ ++ ++k+CErH+hrg++rsrk++ee Gorai.013G225300.1 74 DPEPGRCRRTDGKKWRCSKLAYTDSKYCERHMHRGKNRSRKHVEE 118 79*****************************************97 PP
2	QLQ	45.9	1.7e-16	13	46	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FTa+Q+++L +Q+l++Ky++ + P+P++Ll+ i Gorai.013G225300.1 13 PFTATQWEELQNQVLIFKYMVLGIPIPSYLLFTI 46 8*****************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.0E-8	12	48	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.7E-11	13	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.788	13	48	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.507	74	118	IPR014977	WRC domain
Pfam	PF08879	1.1E-19	75	117	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MMMMSGRNSS RFPFTATQWE ELQNQVLIFK YMVLGIPIPS YLLFTIKTSF LEPHQHDKIG 60 WNCGGEMRMV RKVDPEPGRC RRTDGKKWRC SKLAYTDSKY CERHMHRGKN RSRKHVEEEE 120 EASTGITMVN PSSTATQSLS LSFSSFETHA STEKPTLCLL GSSSYRFGHK QPWTQFKLMS 180 F*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.
Uniprot	TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15960617}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:15960617}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616704	0.0	JX616704.1 Gossypium hirsutum clone NBRI_GE61556 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465703.1	1e-122	PREDICTED: growth-regulating factor 6-like
Refseq	XP_012465704.1	1e-122	PREDICTED: growth-regulating factor 6-like
Refseq	XP_012465705.1	1e-122	PREDICTED: growth-regulating factor 6-like
Swissprot	Q8L8A6	3e-44	GRF5_ARATH; Growth-regulating factor 5
TrEMBL	A0A0D2VHD8	1e-134	A0A0D2VHD8_GOSRA; Uncharacterized protein
STRING	Gorai.013G225300.1	1e-135	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4567	26	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-46	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Gorai.013G225300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]