PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G213900.3
Common NameB456_013G213900, LOC105783229
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 442aa    MW: 48640.8 Da    PI: 6.4
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G213900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073784112154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Gorai.013G213900.3 378 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 411
                         469*****************************87 PP
2ELK28.72.9e-10332353122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Gorai.013G213900.3 332 ELKHELKQGYKEKIVDIREEIL 353
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.9E-19164208IPR005540KNOX1
PfamPF037901.9E-17166207IPR005540KNOX1
SMARTSM012564.8E-28220275IPR005541KNOX2
PfamPF037917.5E-20224274IPR005541KNOX2
PfamPF037891.0E-6332353IPR005539ELK domain
PROSITE profilePS512139.969332352IPR005539ELK domain
SMARTSM011886.1E-4332353IPR005539ELK domain
PROSITE profilePS5007111.791352415IPR001356Homeobox domain
SMARTSM003895.1E-11354419IPR001356Homeobox domain
SuperFamilySSF466894.71E-16354418IPR009057Homeodomain-like
CDDcd000862.89E-11355416No hitNo description
Gene3DG3DSA:1.10.10.603.1E-25359416IPR009057Homeodomain-like
PfamPF059201.3E-17372411IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAFHHNNHLS DHHQDLPLHH LTEHHHQQAS QLSETNGPNW LNTALLRSQQ PQPAQPHSSQ  60
FSEPNFLNLH TTRAASDSTT GSQAPNQWLS RTSSSLLHRN HSDVIDDVGA AAEAARGGGG  120
ESMVAMESGG SGNNNGIMNN NKSEGVVVES GGGGGDGVVN WQNARYKADI LAHPLCEQLL  180
SAHVACLRVA TPVDQLPRID AQLAQSQHVV AKYSSLSGGS QGVVADDKEL DQFLTHYVLL  240
LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSDDD DDQVDSDANL  300
FDGSLEGPDS MGFGPLILTD SEKSLMERVR HELKHELKQG YKEKIVDIRE EILRKRRAGK  360
LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWNSNPSTS  420
TVSKSKRKRS NAGENNGDRF M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408428RKRNWNSNPSTSTVSKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.8570.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487470540.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464013.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0D2U4U70.0A0A0D2U4U7_GOSRA; Uncharacterized protein
STRINGGorai.013G213900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-173KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]