PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G206400.1
Common NameB456_013G206400, LOC105782975
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 176aa    MW: 19301.1 Da    PI: 10.1632
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G206400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-192559135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  Gorai.013G206400.1 25 CTDCKTTKTPLWRGGPSGPKSLCNACGIKYRKRRR 59
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-131859No hitNo description
SMARTSM004012.2E-171974IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.7E-162359IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.20E-142461No hitNo description
PROSITE profilePS5011412.6372555IPR000679Zinc finger, GATA-type
PfamPF003202.1E-172559IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402550IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGVMDLREQE SLNEDTMSET MKKFCTDCKT TKTPLWRGGP SGPKSLCNAC GIKYRKRRRA  60
MLGLNEVSEK KKVKWHLSSS SSSSSSSTVT TSSASIATTN DESVDDTKPS GRFSGLGEAV  120
KIRLLALSSE VLLQRSSSLT WVVKKQRCQR RRKVGEDEEL AAFSLMAMSY GLVFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463566.11e-125PREDICTED: GATA transcription factor 15-like
RefseqXP_016667886.11e-125PREDICTED: GATA transcription factor 15-like
TrEMBLA0A0D2VGG11e-124A0A0D2VGG1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8HPF51e-124A0A1U8HPF5_GOSHI; GATA transcription factor 15-like
STRINGGorai.013G206400.11e-124(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16911712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.14e-18GATA transcription factor 15
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]