PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G184200.1

Common Name

B456_013G184200, LOC105782910

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 332aa MW: 36104 Da PI: 8.33

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G184200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.5	6.5e-25	89	133	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Gorai.013G184200.1 89 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 133 79****************************************986 PP
2	QLQ	64.3	3.1e-22	27	63	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk Gorai.013G184200.1 27 SPFTVSQWQELEHQALIFKYMMAGLPVPPDLVLPIQK 63 89*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.1E-12	27	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.7E-16	28	62	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.498	28	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.762	89	133	IPR014977	WRC domain
Pfam	PF08879	3.8E-21	90	132	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MNSGGGGGGG GAESAGVGMV AMRSSSSPFT VSQWQELEHQ ALIFKYMMAG LPVPPDLVLP 60 IQKSFESISQ RFFHHPTMGY CSFYGKKVDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM 120 HRGRNRSRKP VESQTMAQSL STVTSLTVSG STTGGGGTGT ASFQSLPLHA FGGTQVTALA 180 TGQSNYHVES IPYGIPRKDY RSQGIKPDAG GHSFISEALG SNRDTWPLMQ SRVSSFPQSK 240 SDGNPVLLND YPQHSFFSDF NSGETVKPEG QSLRPFFDEW PKTRDTWSAL EDDRSNQTSF 300 STTQLSISIP MASSDFSTTG SHSPHGEFQT P*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ382488	3e-46	FQ382488.1 Vitis vinifera clone SS0ABG55YD19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463459.1	0.0	PREDICTED: growth-regulating factor 4-like
Refseq	XP_016704987.1	0.0	PREDICTED: growth-regulating factor 4-like
Swissprot	Q6AWY6	7e-86	GRF3_ORYSJ; Growth-regulating factor 3
TrEMBL	A0A0D2VCZ6	0.0	A0A0D2VCZ6_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8KR92	0.0	A0A1U8KR92_GOSHI; growth-regulating factor 4-like
STRING	Gorai.013G184200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14339	10	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-46	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Gorai.013G184200.1
Entrez Gene	105782910

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]