PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G179800.3

Common Name

B456_013G179800, LOC105782507

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 408aa MW: 44446.9 Da PI: 7.5854

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G179800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	56	82	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Gorai.013G179800.3 56 PGEPDCSYYIRTGLCRFGATCHFNHPP 82 5789*********************97 PP
2	zf-CCCH	36.4	8.5e-12	110	133	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ Gorai.013G179800.3 110 TECAYYLRTGQCKFGSTCKFHHPQ 133 68********************97 PP
3	zf-CCCH	39.1	1.2e-12	268	294	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ Gorai.013G179800.3 268 PGEPECQFYMKTGDCKFGAVCKFHHPR 294 5799*********************96 PP
4	zf-CCCH	40.9	3.5e-13	314	340	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ Gorai.013G179800.3 314 PGEPLCIFYSRYGICKFGPSCKFNHPM 340 589**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.033	55	83	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.8E-5	55	82	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-8	57	82	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-5	60	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.9E-4	61	81	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-4	107	133	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.408	107	134	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-9	109	133	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.93E-6	109	134	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	112	132	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.1E-6	267	294	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.173	267	295	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-9	269	294	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	271	296	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	273	295	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.727	313	341	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.0E-7	313	340	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-10	315	340	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.09E-5	316	340	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-4	318	338	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MEFSFDAGIP MSRTATAAVP VTEGSSLSPS LNQDAMWQMN LRSSETMESS PYPERPGEPD 60 CSYYIRTGLC RFGATCHFNH PPNRKLAIAA ARMKGEFPER VGQPECQNET ECAYYLRTGQ 120 CKFGSTCKFH HPQPTNMMVS LRGSPIYQTV PSPTTPGQQS YPGGITNWSR ASFIPNPRWQ 180 GPSSYASLIL PQGMVSVPGW NAYSGQLASV SSSENLQQTN VNHQIHGTSR QNESATAGSQ 240 ASFSELRSSS VPVGVYALQR ENVFPERPGE PECQFYMKTG DCKFGAVCKF HHPRERVLPA 300 PDCVLSPIGL PLRPGEPLCI FYSRYGICKF GPSCKFNHPM GIFTYNYSPS SPSDAPVHCF 360 LGSSSGTAGL NLSSEGLVEA VPTKPRRLSL SKNRQLSPSD DDIDAEG*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MEFSFDAGIP MSRTATAAVP VTEGSSLSPS LNQDAMWQMN LRSSETMESS PYPERPGEPD  60
CSYYIRTGLC RFGATCHFNH PPNRKLAIAA ARMKGEFPER VGQPECQNET ECAYYLRTGQ  120
CKFGSTCKFH HPQPTNMMVS LRGSPIYQTV PSPTTPGQQS YPGGITNWSR ASFIPNPRWQ  180
GPSSYASLIL PQGMVSVPGW NAYSGQLASV SSSENLQQTN VNHQIHGTSR QNESATAGSQ  240
ASFSELRSSS VPVGVYALQR ENVFPERPGE PECQFYMKTG DCKFGAVCKF HHPRERVLPA  300
PDCVLSPIGL PLRPGEPLCI FYSRYGICKF GPSCKFNHPM GIFTYNYSPS SPSDAPVHCF  360
LGSSSGTAGL NLSSEGLVEA VPTKPRRLSL SKNRQLSPSD DDIDAEG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462743.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
Swissprot	Q9SWF9	0.0	ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBL	A0A0D2VFD2	0.0	A0A0D2VFD2_GOSRA; Uncharacterized protein
STRING	Gorai.013G179800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-152	zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Gorai.013G179800.3
Entrez Gene	105782507

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]