PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G179800.2

Common Name

B456_013G179800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 253aa MW: 27943.8 Da PI: 9.3654

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G179800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.3	9.7e-12	56	82	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Gorai.013G179800.2 56 PGEPDCSYYIRTGLCRFGATCHFNHPP 82 5789*********************97 PP
2	zf-CCCH	39.8	7.5e-13	103	127	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Gorai.013G179800.2 103 QPECQYYLKTGTCKFGATCKFHHPR 127 799********************96 PP
3	zf-CCCH	37.5	3.8e-12	149	173	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ Gorai.013G179800.2 149 ETECAYYLRTGQCKFGSTCKFHHPQ 173 578********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.033	55	83	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.8E-5	55	82	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.7E-8	57	82	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.03E-5	60	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-4	61	81	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.7E-6	100	127	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.356	100	128	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.1E-10	103	127	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.85E-7	104	129	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.3E-5	106	127	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.338	146	174	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-5	146	173	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.68E-7	147	174	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.9E-10	149	173	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.5E-5	152	172	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEFSFDAGIP MSRTATAAVP VTEGSSLSPS LNQDAMWQMN LRSSETMESS PYPERPGEPD 60 CSYYIRTGLC RFGATCHFNH PPNRKLAIAA ARMKGEFPER VGQPECQYYL KTGTCKFGAT 120 CKFHHPRDKA GIAGRVSLNI LGYPLRPNET ECAYYLRTGQ CKFGSTCKFH HPQPTNMMVS 180 LRGSPIYQTV PSPTTPGQQS YPGGITNWSR ASFIPNPRWQ GPSSYASLIL PQGMVSVPGW 240 NAYSVRSKRE IK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462742.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
Swissprot	Q9SWF9	1e-136	ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBL	A0A0D2U399	0.0	A0A0D2U399_GOSRA; Uncharacterized protein
STRING	Gorai.013G179800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-118	zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Gorai.013G179800.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]