PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G179800.1
Common NameB456_013G179800, LOC105782507
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 448aa    MW: 48880.1 Da    PI: 8.2952
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G179800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-115682127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+++ rtG C++G++C+F+H+p
  Gorai.013G179800.1 56 PGEPDCSYYIRTGLCRFGATCHFNHPP 82
                        5789*********************97 PP

2zf-CCCH38.81.6e-12103127327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Gorai.013G179800.1 103 QPECQYYLKTGTCKFGATCKFHHPR 127
                         799********************96 PP

3zf-CCCH36.57.9e-12149173327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         + +C +++rtG+Ck+G++CkF+H++
  Gorai.013G179800.1 149 ETECAYYLRTGQCKFGSTCKFHHPQ 173
                         578********************97 PP

4zf-CCCH391.4e-12308334127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+f+++tG Ck+G+ CkF+H++
  Gorai.013G179800.1 308 PGEPECQFYMKTGDCKFGAVCKFHHPR 334
                         5799*********************96 PP

5zf-CCCH40.73.9e-13354380127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF+H++
  Gorai.013G179800.1 354 PGEPLCIFYSRYGICKFGPSCKFNHPM 380
                         589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8E-55582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0335583IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-85782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-56083IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-46181IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356100128IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6104129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5106127IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338146174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6147174IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4152172IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-6307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173307335IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5311336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4313335IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727353381IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10355380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5356380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4358378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEFSFDAGIP MSRTATAAVP VTEGSSLSPS LNQDAMWQMN LRSSETMESS PYPERPGEPD  60
CSYYIRTGLC RFGATCHFNH PPNRKLAIAA ARMKGEFPER VGQPECQYYL KTGTCKFGAT  120
CKFHHPRDKA GIAGRVSLNI LGYPLRPNET ECAYYLRTGQ CKFGSTCKFH HPQPTNMMVS  180
LRGSPIYQTV PSPTTPGQQS YPGGITNWSR ASFIPNPRWQ GPSSYASLIL PQGMVSVPGW  240
NAYSGQLASV SSSENLQQTN VNHQIHGTSR QNESATAGSQ ASFSELRSSS VPVGVYALQR  300
ENVFPERPGE PECQFYMKTG DCKFGAVCKF HHPRERVLPA PDCVLSPIGL PLRPGEPLCI  360
FYSRYGICKF GPSCKFNHPM GIFTYNYSPS SPSDAPVHCF LGSSSGTAGL NLSSEGLVEA  420
VPTKPRRLSL SKNRQLSPSD DDIDAEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462742.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0D2SG760.0A0A0D2SG76_GOSRA; Uncharacterized protein
STRINGGorai.013G179800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]