PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G179800.1 | ||||||||
Common Name | B456_013G179800, LOC105782507 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 448aa MW: 48880.1 Da PI: 8.2952 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.2 | 2e-11 | 56 | 82 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Gorai.013G179800.1 56 PGEPDCSYYIRTGLCRFGATCHFNHPP 82 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 103 | 127 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Gorai.013G179800.1 103 QPECQYYLKTGTCKFGATCKFHHPR 127 799********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 7.9e-12 | 149 | 173 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ Gorai.013G179800.1 149 ETECAYYLRTGQCKFGSTCKFHHPQ 173 578********************97 PP | |||||||
4 | zf-CCCH | 39 | 1.4e-12 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ Gorai.013G179800.1 308 PGEPECQFYMKTGDCKFGAVCKFHHPR 334 5799*********************96 PP | |||||||
5 | zf-CCCH | 40.7 | 3.9e-13 | 354 | 380 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ Gorai.013G179800.1 354 PGEPLCIFYSRYGICKFGPSCKFNHPM 380 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.8E-5 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.033 | 55 | 83 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-8 | 57 | 82 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 60 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-4 | 61 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-10 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 104 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-5 | 106 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 149 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 152 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-6 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.173 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-9 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 311 | 336 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 313 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-7 | 353 | 380 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.727 | 353 | 381 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 355 | 380 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-5 | 356 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 358 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MEFSFDAGIP MSRTATAAVP VTEGSSLSPS LNQDAMWQMN LRSSETMESS PYPERPGEPD 60 CSYYIRTGLC RFGATCHFNH PPNRKLAIAA ARMKGEFPER VGQPECQYYL KTGTCKFGAT 120 CKFHHPRDKA GIAGRVSLNI LGYPLRPNET ECAYYLRTGQ CKFGSTCKFH HPQPTNMMVS 180 LRGSPIYQTV PSPTTPGQQS YPGGITNWSR ASFIPNPRWQ GPSSYASLIL PQGMVSVPGW 240 NAYSGQLASV SSSENLQQTN VNHQIHGTSR QNESATAGSQ ASFSELRSSS VPVGVYALQR 300 ENVFPERPGE PECQFYMKTG DCKFGAVCKF HHPRERVLPA PDCVLSPIGL PLRPGEPLCI 360 FYSRYGICKF GPSCKFNHPM GIFTYNYSPS SPSDAPVHCF LGSSSGTAGL NLSSEGLVEA 420 VPTKPRRLSL SKNRQLSPSD DDIDAEG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012462742.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A0D2SG76 | 0.0 | A0A0D2SG76_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G179800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3389 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G179800.1 |
Entrez Gene | 105782507 |
Publications ? help Back to Top | |||
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