PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G172500.3

Common Name

B456_013G172500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 260aa MW: 28724.2 Da PI: 5.7319

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G172500.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.7	1.9e-11	179	224	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i +Le+ v +L++e +aL ++ Gorai.013G172500.3 179 KRVKRILANRQSAQRSRVRKLQYISQLERSVTTLQTEVSALSPRVA 224 8999*********************************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-13	175	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.565	177	229	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.29E-11	179	233	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-13	179	230	No hit	No description
Pfam	PF00170	4.4E-10	179	223	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.35E-24	180	230	No hit	No description
PROSITE pattern	PS00036	0	182	197	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MAELPPKIPS ISQNWPSFPH DKMPSMANFF PSTITNHPSW VDEFLDFSSA RRGAHRRSMS 60 DSIAFLEQPL VEEECRDSNA MPMMTTTTVS NLNMFDRLDD DQLMSLFSDD VAVTMAAPAP 120 TVSSSNPSTP TSSNNEEKTA PSTDLQQPKN EPGEVESTRK LSASEAPPSS NGDSIIDPKR 180 VKRILANRQS AQRSRVRKLQ YISQLERSVT TLQTEVSALS PRVAFLDHQR LILNVDNSAL 240 KQRIAALAQD KIFKDGTTC*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464256.1	0.0	PREDICTED: basic leucine zipper 34-like
Swissprot	Q9M2K4	3e-81	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A0A0D2VGT0	0.0	A0A0D2VGT0_GOSRA; Uncharacterized protein
STRING	Gorai.013G172500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	7e-76	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G172500.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]