PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G172000.3
Common NameB456_013G172000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 373aa    MW: 41663 Da    PI: 8.3819
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G172000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.18.5e-0554713855
                        TS-HHHHHHHHHHHHHHH CS
            Homeobox 38 gLterqVkvWFqNrRake 55
                         ++ +q+ +WFqNrR+  
  Gorai.013G172000.3 54 VVQFKQIWNWFQNRRYAI 71
                        66779**********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-41777IPR009057Homeodomain-like
SuperFamilySSF466892.45E-81775IPR009057Homeodomain-like
PfamPF167192.4E-41130257IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGRHPSSGGP AFRFTQTEME TILQEHHNQM PVREILMSLA DKFSESAERK GKIVVQFKQI  60
WNWFQNRRYA IRAKSNKVPG KLNITSMPRD DSNPMRNVPQ PVAAPVPPHM TAPMPASTVP  120
GAGRNLSESY MEFEAKSSRD GAWYDVATFL AHRYLDAGDP EVQVRIAGFG PEEDEWVNIR  180
KHVRQRSLPC EASECVAVLP GDLVLCFQEG KDQALYFDAH VLDAQRRRHD IRGCRCRFLV  240
RYDHDQSEEI VPLRKVCRRP ETDYRLQQLH AASNLSNHQH KTSTDQSTAL TPKIIGSSTE  300
AMQKLQNPDQ SRTATDSHFN VSVAAQTTNQ ESKILGIVTT DVTDPRISPV KNAMAAAATG  360
IGPGQNVQEA KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461312614134SHH1 SAWADEE
4iur_B2e-461312614134SHH1 SAWADEE
4iut_A2e-461312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461312614134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461312614134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463612.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ71e-155SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0D2SFQ90.0A0A0D2SFQ9_GOSRA; Uncharacterized protein
STRINGGorai.013G172000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-141sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]