PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G172000.1
Common NameB456_013G172000, LOC105783010
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 376aa    MW: 41962.3 Da    PI: 8.163
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G172000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.66.7e-061374655
                        S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
            Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                        +ft++++ e+e+  ++  n+ p +e    LA+k            ++ +q+ +WFqNrR+  
  Gorai.013G172000.1 13 RFTQTEVAEMETILQEhhNQMPVREILMSLADKFsesaerkgkiVVQFKQIWNWFQNRRYAI 74
                        69999********99777999********************9999999***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.001781IPR001356Homeobox domain
SuperFamilySSF466893.08E-101278IPR009057Homeodomain-like
CDDcd000865.95E-41375No hitNo description
Gene3DG3DSA:1.10.10.609.9E-71380IPR009057Homeodomain-like
PROSITE profilePS500719.4421377IPR001356Homeobox domain
PfamPF167192.5E-41133260IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGRHPSSGGP AFRFTQTEVA EMETILQEHH NQMPVREILM SLADKFSESA ERKGKIVVQF  60
KQIWNWFQNR RYAIRAKSNK VPGKLNITSM PRDDSNPMRN VPQPVAAPVP PHMTAPMPAS  120
TVPGAGRNLS ESYMEFEAKS SRDGAWYDVA TFLAHRYLDA GDPEVQVRIA GFGPEEDEWV  180
NIRKHVRQRS LPCEASECVA VLPGDLVLCF QEGKDQALYF DAHVLDAQRR RHDIRGCRCR  240
FLVRYDHDQS EEIVPLRKVC RRPETDYRLQ QLHAASNLSN HQHKTSTDQS TALTPKIIGS  300
STEAMQKLQN PDQSRTATDS HFNVSVAAQT TNQESKILGI VTTDVTDPRI SPVKNAMAAA  360
ATGIGPGQNV QEAKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461342644134SHH1 SAWADEE
4iur_B2e-461342644134SHH1 SAWADEE
4iut_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463612.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ71e-158SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0D2U2Z90.0A0A0D2U2Z9_GOSRA; Uncharacterized protein
STRINGGorai.013G172000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-144sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]