PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G164700.2
Common NameB456_013G164700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 359aa    MW: 40461.4 Da    PI: 7.5273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G164700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS409.33.6e-125635522374
                GRAS  22 alLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112
                         +l+a+ ++ +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +    +e l+++++++e++P+lkf++++aN aI ea  +e+++
  Gorai.013G164700.2   6 ELIAKAKDAVSIAGEPIQRLGAYMVEGLVARKEASGSNIYRALRCREPE---GKELLSYMHILYEICPYLKFGYMAANGAIAEACRNEDHI 93 
                         788999999***************************************9...9************************************** PP

                GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                         HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   le++g+rL+ + e++++p+ef+  v     d++ ++L+++pgEa
  Gorai.013G164700.2  94 HIIDFQIAQGTQWVTLLQALAARPGGAPRVRITGIDDPVSKyaRGGGLEAVGRRLSALSEKFNIPVEFHG-VPVFAPDVTRDMLSLRPGEA 183
                         **************************************99999999************************.688899************** PP

                GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                         laVn+ lqlh+++desv+++++rd +L+lvkslsPkv ++ eqe+++n+++Fl rf+e+leyy a+f+s++++lpr+ +eri+vE+++l+r
  Gorai.013G164700.2 184 LAVNFPLQLHHTPDESVDVNNPRDGILRLVKSLSPKVTTLLEQESNTNTAPFLPRFIETLEYYLAIFESIDETLPRDRKERINVEQQCLAR 274
                         ******************************************************************************************* PP

                GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         +ivn++aceg+er+erhe l+kW++rl++aGF+++pls+++++ +++llr +++  y++ e++g+++l Wkdr+L+s+SaWr
  Gorai.013G164700.2 275 DIVNIIACEGKERVERHELLGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRYYSK-HYTLVEKDGAMLLRWKDRNLISASAWR 355
                         **************************************************9995.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.5431336IPR005202Transcription factor GRAS
PfamPF035141.2E-1226355IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDEFDELIAK AKDAVSIAGE PIQRLGAYMV EGLVARKEAS GSNIYRALRC REPEGKELLS  60
YMHILYEICP YLKFGYMAAN GAIAEACRNE DHIHIIDFQI AQGTQWVTLL QALAARPGGA  120
PRVRITGIDD PVSKYARGGG LEAVGRRLSA LSEKFNIPVE FHGVPVFAPD VTRDMLSLRP  180
GEALAVNFPL QLHHTPDESV DVNNPRDGIL RLVKSLSPKV TTLLEQESNT NTAPFLPRFI  240
ETLEYYLAIF ESIDETLPRD RKERINVEQQ CLARDIVNII ACEGKERVER HELLGKWKSR  300
LTMAGFRQYP LSSYVNSVIR SLLRYYSKHY TLVEKDGAML LRWKDRNLIS ASAWRCNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-63835526375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.13580.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488278860.0
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703488.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0D2U2H10.0A0A0D2U2H1_GOSRA; Uncharacterized protein
TrEMBLA0A0D2VGA70.0A0A0D2VGA7_GOSRA; Uncharacterized protein
STRINGGorai.013G164700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-176scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]