PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G159200.1
Common NameB456_013G159200, LOC105784623
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 522aa    MW: 57954.3 Da    PI: 7.1018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G159200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-152370148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed  l+++v+ +G g+W+++ r  g+ R++k+c++rw ++l
  Gorai.013G159200.1 23 KGPWTAAEDAVLAEYVRTHGEGNWNAVQRNTGLARCGKSCRLRWANHL 70
                        79******************************************9986 PP
2Myb_DNA-binding48.22.5e-1576119146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++++eE+ ++v++++ +G++ W++ a++++ gRt++++k++w++
  Gorai.013G159200.1  76 KGAFSPEEERIIVELHAIMGNK-WARMAARLP-GRTDNEIKNYWNT 119
                         799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3381870IPR017930Myb domain
SuperFamilySSF466891.37E-2821117IPR009057Homeodomain-like
SMARTSM007174.6E-122272IPR001005SANT/Myb domain
PfamPF002498.1E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-232477IPR009057Homeodomain-like
CDDcd001677.75E-102570No hitNo description
PROSITE profilePS5129424.8871125IPR017930Myb domain
SMARTSM007176.8E-1675123IPR001005SANT/Myb domain
PfamPF002494.1E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2478124IPR009057Homeodomain-like
CDDcd001672.66E-1178119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MMGNNNNNHQ VSMQKEEGVM LKKGPWTAAE DAVLAEYVRT HGEGNWNAVQ RNTGLARCGK  60
SCRLRWANHL RPNLKKGAFS PEEERIIVEL HAIMGNKWAR MAARLPGRTD NEIKNYWNTR  120
VKRRQRQGLP LYPPEIQSLY SQTQPVLTPP STSSFSFQHS TTMLTSSSPS PPPRLLSYDP  180
HSTATPPPVQ SPSPASTPPP LPSPSHVSPL QSPHKPSFSS IPLADSFTSN TPSSSLDFYF  240
PRPLPSLEQP LRNKRPRHDE NNTNNGGSSF MLPFSSLMKT DPFNPHTVTN NSLNPQHYSN  300
SYCLDQTTFD MASSSRFLQP HFDPGQFIST PRFGYNQLKT ELPSNQIFTQ DGNSQVRFDP  360
KGNNNYSSHN QIQNSNHHSS GLNISGNGLV EDMLQEVQAL NEKNEIMASQ SCLVRPSSSS  420
EGLASGLEAK EESKEQIMNT TKHVDYSHVN PSSMAMAIPE WYINNGESSI GQSSTVTYDD  480
LALEFELHDQ IASLLPIDTA PDHHGRSSSS YTWVHSFPGI C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-31211245107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146031e-132JX614603.1 Gossypium hirsutum clone NBRI_GE58120 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465976.10.0PREDICTED: transcription factor MYB28-like
TrEMBLA0A0D2VED20.0A0A0D2VED2_GOSRA; Uncharacterized protein
STRINGGorai.013G159200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-69myb domain protein 101
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]