PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G155200.1 | ||||||||
Common Name | B456_013G155200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 206aa MW: 22865.8 Da PI: 10.0606 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.6 | 9e-10 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r+vt+ kR + + K + LS+ C+ + +vi++s+ Gorai.013G155200.1 11 ITNDSTRKVTYKKRMKALKNKMSKLSTRCGSDTCVIMYSPY 51 89*************************************84 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.035 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-15 | 1 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.6E-11 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.03E-21 | 2 | 67 | No hit | No description |
Pfam | PF10491 | 4.2E-5 | 3 | 54 | IPR019525 | Nuclear respiratory factor 1, NLS/DNA-binding, dimerisation domain |
Pfam | PF00319 | 5.2E-12 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MTRKKVKLAY ITNDSTRKVT YKKRMKALKN KMSKLSTRCG SDTCVIMYSP YKSQLEVWPS 60 PMKEKEITQV VINNICGKGA VHGLNSGALS DISLLLDKKM SNIDKKIDAL SKTPLNLQGL 120 SPLPSSSVVA LPLMTMVTPK AMLRTGTENI VQPDVNNMDP MQRQQWIMDL VCNNNNNPQT 180 HVGGDEMMFQ FGDNIKLNNG LCLFP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 25 | RKKVKLAYITNDSTRKVTYKKRMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016729029.1 | 3e-89 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D2VE97 | 1e-149 | A0A0D2VE97_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G155200.1 | 1e-150 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 2e-18 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G155200.1 |
Publications ? help Back to Top | |||
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