PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G153100.1
Common NameB456_013G153100, LOC105784004
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 173aa    MW: 18570.9 Da    PI: 6.519
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G153100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.44.4e-5824119297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +eqdrflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfedyveplkvyl+++re
  Gorai.013G153100.1  24 KEQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFRE 114
                         79***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +egek
  Gorai.013G153100.1 115 MEGEK 119
                         ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-5419127IPR009072Histone-fold
SuperFamilySSF471134.5E-4126127IPR009072Histone-fold
PfamPF008083.4E-282993IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.5E-215775No hitNo description
PROSITE patternPS0068506076IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.5E-217694No hitNo description
PRINTSPR006157.5E-2195113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVDSDTESGG GPNNASNADL SSPKEQDRFL PIANVSRIMK KALPANAKIS KEAKETVQEC  60
VSEFISFITG EASDKCQKEK RKTINGDDLL WAMTTLGFED YVEPLKVYLQ RFREMEGEKT  120
AVARDKDAPL AGGVGAAAAA GSSGMYGMMV HQQHQGHVYG SGGFHQMGRG PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4824114292Transcription factor HapC (Eurofung)
4g92_B2e-4824114292Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.3320.0flower|seedling| flowering
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276491e-104HQ527649.1 Gossypium herbaceum clone NBRI_E_3586 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465202.11e-127PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotQ75IZ74e-70NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBLA0A0D2SEQ71e-126A0A0D2SEQ7_GOSRA; Uncharacterized protein
STRINGGorai.013G153100.11e-127(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-70nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]