PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G146700.4
Common NameB456_013G146700, LOC105783213
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 349aa    MW: 38251.6 Da    PI: 8.1683
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G146700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.1e-082171126
                        GTS--TTTTT-SS-SS CS
             zf-CCCH 11 rtGtCkyGdrCkFaHg 26
                         t tCk+Gd+CkF H+
  Gorai.013G146700.4  2 LTRTCKFGDSCKFDHP 17
                        689************8 PP
2zf-CCCH35.41.8e-114470127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C++f++t  Ck+G++CkF+H++
  Gorai.013G146700.4 44 PGEPDCPYFLKTQRCKFGSKCKFNHPK 70
                        5789*********************96 PP
3zf-CCCH41.91.7e-1393117327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tGtCk+G++CkF+H++
  Gorai.013G146700.4  93 EPPCAFYMKTGTCKFGSTCKFNHPK 117
                         79*********************96 PP
4zf-CCCH39.31.1e-12163187226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C+f+++tG CkyG++C+++H+
  Gorai.013G146700.4 163 DEVDCPFYLKTGSCKYGSTCRYNHP 187
                         6789********************9 PP
5zf-CCCH43.36.1e-14254278226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C+++++tG+Ck+GdrCkF+H+
  Gorai.013G146700.4 254 GQTECDYYMKTGECKFGDRCKFHHP 278
                         6789********************8 PP
6zf-CCCH406.6e-13308329627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C+++++tGtCkyG++CkF H+p
  Gorai.013G146700.4 308 CPYYMKTGTCKYGATCKFDHPP 329
                         ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.089119IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5117IPR000571Zinc finger, CCCH-type
SMARTSM0035646218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5074371IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-64370IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-94570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-64874IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-54971IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.12690118IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-690117IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-1193117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-694118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-695116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.704161189IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6161188IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10163187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6164189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4167186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723252280IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7252279IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-11254278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-7254282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-6258279IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.845302330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6305329IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10308329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-6308327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MLTRTCKFGD SCKFDHPIWV PEGGIPYWKE VPPVPAGESL PERPGEPDCP YFLKTQRCKF  60
GSKCKFNHPK DKLDAPGDSE NLTVSGLPER PSEPPCAFYM KTGTCKFGST CKFNHPKDIQ  120
IQLSLQNNVN CEQSDIAMKI GGISGDIKPA LYHNSKGLPV RPDEVDCPFY LKTGSCKYGS  180
TCRYNHPDRN AFVPPVALGH SLIASASNLN IGVVNPASSL YQTIDPRLSQ TTLLAQQTMP  240
TLVGTQPVYP QRPGQTECDY YMKTGECKFG DRCKFHHPID RLTTNEASQQ AIKLTLAGLP  300
RREGSVHCPY YMKTGTCKYG ATCKFDHPPP GEVMSVTGVQ GTSTTMSG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4540002e-35AM454000.1 Vitis vinifera contig VV78X082437.9, whole genome shotgun sequence.
GenBankAP0150392e-35AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
GenBankLN6818002e-35LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132552e-35LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463984.10.0PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-153C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0D2SE640.0A0A0D2SE64_GOSRA; Uncharacterized protein
STRINGGorai.013G146700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-155floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]