PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.013G146700.3 | ||||||||
Common Name | B456_013G146700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 382aa MW: 41831.4 Da PI: 8.0471 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34 | 5.1e-11 | 104 | 128 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ Gorai.013G146700.3 104 GEKDCAHYMLTRTCKFGDSCKFDHP 128 7889********************8 PP | |||||||
2 | zf-CCCH | 35.2 | 2e-11 | 155 | 181 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G++CkF+H++ Gorai.013G146700.3 155 PGEPDCPYFLKTQRCKFGSKCKFNHPK 181 5789*********************96 PP | |||||||
3 | zf-CCCH | 41.7 | 1.9e-13 | 204 | 228 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tGtCk+G++CkF+H++ Gorai.013G146700.3 204 EPPCAFYMKTGTCKFGSTCKFNHPK 228 79*********************96 PP | |||||||
4 | zf-CCCH | 39.1 | 1.3e-12 | 274 | 298 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG CkyG++C+++H+ Gorai.013G146700.3 274 DEVDCPFYLKTGSCKYGSTCRYNHP 298 6789********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0011 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.507 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 103 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-9 | 104 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 108 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.507 | 154 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.3E-6 | 154 | 181 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.1E-9 | 156 | 181 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 159 | 185 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 160 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 201 | 228 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.126 | 201 | 229 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-11 | 204 | 228 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 205 | 229 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-6 | 206 | 227 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.704 | 272 | 300 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-6 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-10 | 274 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.29E-5 | 275 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 278 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 382 aa Download sequence Send to blast |
MANQFYGYSS PSPSASTLHR YLDSDAASQS QSHLLQQLHP SAAAAAAAAA SLIKRPSQVL 60 YHQNVLDAQN TLGQIEAWYS ASSLVKRPRL ESASNLPIYP QRPGEKDCAH YMLTRTCKFG 120 DSCKFDHPIW VPEGGIPYWK EVPPVPAGES LPERPGEPDC PYFLKTQRCK FGSKCKFNHP 180 KDKLDAPGDS ENLTVSGLPE RPSEPPCAFY MKTGTCKFGS TCKFNHPKDI QIQLSLQNNV 240 NCEQSDIAMK IGGISGDIKP ALYHNSKGLP VRPDEVDCPF YLKTGSCKYG STCRYNHPDR 300 NAFVPPVALG HSLIASASNL NIGVVNPASS LYQTIDPRLS QTTLLAQQTM PTLVGTQPVY 360 PQRPGQTECD VRINPLCFLN F* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463984.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 | ||||
Swissprot | Q941Q3 | 1e-136 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A0D2U1H0 | 0.0 | A0A0D2U1H0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G146700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-135 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.013G146700.3 |
Publications ? help Back to Top | |||
---|---|---|---|
|