PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G146700.1
Common NameB456_013G146700, LOC105783213
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 460aa    MW: 50303 Da    PI: 8.2286
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G146700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.5e-11104128226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C +++ t tCk+Gd+CkF H+
  Gorai.013G146700.1 104 GEKDCAHYMLTRTCKFGDSCKFDHP 128
                         7889********************8 PP
2zf-CCCH34.92.5e-11155181127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++f++t  Ck+G++CkF+H++
  Gorai.013G146700.1 155 PGEPDCPYFLKTQRCKFGSKCKFNHPK 181
                         5789*********************96 PP
3zf-CCCH41.42.4e-13204228327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C f+++tGtCk+G++CkF+H++
  Gorai.013G146700.1 204 EPPCAFYMKTGTCKFGSTCKFNHPK 228
                         79*********************96 PP
4zf-CCCH38.81.6e-12274298226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C+f+++tG CkyG++C+++H+
  Gorai.013G146700.1 274 DEVDCPFYLKTGSCKYGSTCRYNHP 298
                         6789********************9 PP
5zf-CCCH42.88.6e-14365389226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C+++++tG+Ck+GdrCkF+H+
  Gorai.013G146700.1 365 GQTECDYYMKTGECKFGDRCKFHHP 389
                         6789********************8 PP
6zf-CCCH39.59.2e-13419440627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C+++++tGtCkyG++CkF H+p
  Gorai.013G146700.1 419 CPYYMKTGTCKYGATCKFDHPP 440
                         ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0011102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507102130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5103129IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4108127IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-6154181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507154182IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-9156181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6159185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5160182IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6201228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126201229IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-11204228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6205229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-6206227IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.704272300IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10274298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.65E-5275300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4278297IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7363390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723363391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7365393IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-11365389IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-6369390IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6413440IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.845413441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6416440IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-6419438IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10419440IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MANQFYGYSS PSPSASTLHR YLDSDAASQS QSHLLQQLHP SAAAAAAAAA SLIKRPSQVL  60
YHQNVLDAQN TLGQIEAWYS ASSLVKRPRL ESASNLPIYP QRPGEKDCAH YMLTRTCKFG  120
DSCKFDHPIW VPEGGIPYWK EVPPVPAGES LPERPGEPDC PYFLKTQRCK FGSKCKFNHP  180
KDKLDAPGDS ENLTVSGLPE RPSEPPCAFY MKTGTCKFGS TCKFNHPKDI QIQLSLQNNV  240
NCEQSDIAMK IGGISGDIKP ALYHNSKGLP VRPDEVDCPF YLKTGSCKYG STCRYNHPDR  300
NAFVPPVALG HSLIASASNL NIGVVNPASS LYQTIDPRLS QTTLLAQQTM PTLVGTQPVY  360
PQRPGQTECD YYMKTGECKF GDRCKFHHPI DRLTTNEASQ QAIKLTLAGL PRREGSVHCP  420
YYMKTGTCKY GATCKFDHPP PGEVMSVTGV QGTSTTMSG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463984.10.0PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0D2SE640.0A0A0D2SE64_GOSRA; Uncharacterized protein
STRINGGorai.013G146700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]