PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G129400.1
Common NameB456_013G129400, LOC105784512
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 313aa    MW: 35341.7 Da    PI: 4.9577
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G129400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-082452782255
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +yp++e++ +L++ +gL+++q+ +WF N+R ++
  Gorai.013G129400.1 245 WPYPTEEDKLKLSEITGLDQKQINNWFINQRKRH 278
                         58*****************************885 PP
2ELK36.78.8e-13198219122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ++K +L+rKY+gyL+sL++EF+
  Gorai.013G129400.1 198 DIKGMLMRKYGGYLSSLRKEFL 219
                         58*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-1860104IPR005540KNOX1
PfamPF037901.2E-1962102IPR005540KNOX1
SMARTSM012563.4E-24107158IPR005541KNOX2
PfamPF037911.5E-24110157IPR005541KNOX2
SMARTSM011883.3E-6198219IPR005539ELK domain
PROSITE profilePS5121310.58198218IPR005539ELK domain
PfamPF037891.7E-9198219IPR005539ELK domain
PROSITE profilePS5007112.276218281IPR001356Homeobox domain
SMARTSM003891.2E-12220285IPR001356Homeobox domain
SuperFamilySSF466892.35E-19220290IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-27223283IPR009057Homeodomain-like
CDDcd000863.10E-12230282No hitNo description
PfamPF059206.7E-17238277IPR008422Homeobox KN domain
PROSITE patternPS000270256279IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEDLYRLDDP IISCSNGIAR VNNFAAPNFT AADFLSPVDH LLQFDDQEVD TDATGSHMSG  60
LIKSQISNHP RYPNLVSAYI ECQKVGAPPK LASLLEEIGR ENRSVNVCSE IGADPELDEF  120
MESYCEVLHR YKEELSKPFN EATTFLSNIK SQLSDLCKGA LTKNLDYPFD EGGGSSVEEL  180
SGGEVEGFEN QDECGRQDIK GMLMRKYGGY LSSLRKEFLK KRKKGKLPKE ARVTLLDWWN  240
NHYRWPYPTE EDKLKLSEIT GLDQKQINNW FINQRKRHWK PSEDMKFALM EGFAGDPMHF  300
GHGVGPGSDN IC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213222LRKEFLKKRK
2219223KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465862.10.0PREDICTED: homeobox protein knotted-1-like 1 isoform X1
SwissprotQ9FP292e-92KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0D2W5J70.0A0A0D2W5J7_GOSRA; Uncharacterized protein
STRINGGorai.013G129400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-75KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]