PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G127900.2
Common NameB456_013G127900, LOC105784160
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 149aa    MW: 15974.4 Da    PI: 10.4906
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G127900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.9e-201044135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  Gorai.013G127900.2 10 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 44
                        ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.4E-16359IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.492440IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-16461IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14544No hitNo description
CDDcd002025.71E-13946No hitNo description
PfamPF003207.9E-181044IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401035IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MMSESNKKFC TDCKTTKTPL WRGGPAGPKS LCNACGIRYR KKRRAMLGLN KGIEKKKKEI  60
SHSPSSDSSS SSAPTNDGGG ENLSANLNGL SESVKMRLFA LGSEVLLQTS SSLSGVVKKQ  120
RCQRRRKLGE EEQAAISLMA LSCDTVFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14157KRRAMLGLNKGIEKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6125253e-32JX612525.1 Gossypium hirsutum clone NBRI_GE55096 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465413.11e-104PREDICTED: GATA transcription factor 15-like
RefseqXP_016703655.11e-104PREDICTED: GATA transcription factor 15-like
TrEMBLA0A0D2U0E81e-103A0A0D2U0E8_GOSRA; Uncharacterized protein
TrEMBLA0A0D2VEK11e-103A0A0D2VEK1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KMJ11e-103A0A1U8KMJ1_GOSHI; GATA transcription factor 15-like
STRINGGorai.013G127900.11e-103(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-24GATA transcription factor 15
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]