PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G127900.1

Common Name

B456_013G127900, LOC105784160

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 164aa MW: 17709.4 Da PI: 10.4224

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G127900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	61.8	8.2e-20	25	59	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++ Gorai.013G127900.1 25 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 59 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	5.7E-14	18	59	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.7E-16	18	74	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	12.492	19	55	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.6E-16	19	76	IPR000679	Zinc finger, GATA-type
CDD	cd00202	2.90E-13	24	61	No hit	No description
Pfam	PF00320	9.4E-18	25	59	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	25	50	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGVMDLRAKK SWSEDMMSES NKKFCTDCKT TKTPLWRGGP AGPKSLCNAC GIRYRKKRRA 60 MLGLNKGIEK KKKEISHSPS SDSSSSSAPT NDGGGENLSA NLNGLSESVK MRLFALGSEV 120 LLQTSSSLSG VVKKQRCQRR RKLGEEEQAA ISLMALSCDT VFA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	72	KRRAMLGLNKGIEKKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX612525	4e-44	JX612525.1 Gossypium hirsutum clone NBRI_GE55096 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465413.1	1e-116	PREDICTED: GATA transcription factor 15-like
Refseq	XP_016703655.1	1e-116	PREDICTED: GATA transcription factor 15-like
TrEMBL	A0A0D2U0E8	1e-114	A0A0D2U0E8_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8KMJ1	1e-114	A0A1U8KMJ1_GOSHI; GATA transcription factor 15-like
STRING	Gorai.013G127900.1	1e-115	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16911	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	4e-24	GATA transcription factor 15

Link Out ? help Back to Top
Phytozome	Gorai.013G127900.1
Entrez Gene	105784160

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]