PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G124600.6

Common Name

B456_013G124600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1150aa MW: 128009 Da PI: 9.5994

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G124600.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	44	84	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++ E e++++a +++G++ Wk++a+ + +R+ +++ ++ Gorai.013G124600.6 44 PWSKAEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMVEAFYI 84 8***************99.*****.**99988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	11.572	40	93	IPR017884	SANT domain
SuperFamily	SSF46689	2.17E-10	40	88	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-7	41	89	IPR001005	SANT/Myb domain
CDD	cd00167	7.47E-7	44	83	No hit	No description
Pfam	PF00249	1.9E-8	44	85	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-5	44	83	IPR009057	Homeodomain-like
Pfam	PF06584	1.9E-33	652	752	IPR033471	DIRP domain
SMART	SM01135	2.8E-57	652	753	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1150 aa Download sequence Send to blast
MAPTRKYKSV NKQYSSKCEV SPDKDAGNSR KSNPKKLFDK LGPPWSKAEI ERFYKAYREY 60 GKDWKKVAAA VRNRSTEMVE AFYIMNRAYL SLPDGVASVI GLIAMMTDHY SVLGGSDAEI 120 ESNEPSKIPR KTQKRKRVKA HFGSSKEDVF LPQSIASTQG CLSLLKRIGF NGINPHAVGR 180 RTPRVPVSYS YRRDDMENYN PPKKRVKKSE ANDNDDEHVA AVTLTGALQR GSCPQFSQRP 240 YKKAECRRSA PVQCYDRMLL QSETTKAKLP SSSSKHRIES RHGGKEPVIG TYIKDTGPTE 300 DMEGAGTVEV REKGKKVYRK KVKAGEFINN LSDDGGEACS GIEEGIIDRA VKGKVEMEIS 360 RGKSKLSPWS QRKKSKKIVS GDESASLDAL LALANLSTSI SPASIIESEV SAKFKEDRIA 420 RETDEKPSAS EAASTSHRRD ETKHIGPKEK VLNLITEAED GTSRKSKVGR YSAKDDNVVS 480 EPKQQAESTN NSKKRKSKSF STSQLQISNP EARMDSPFIQ SFDNEDMAEE MNKSLTKGSS 540 AQSSVQSQQR KSFRVPEDSL TKNDPKFAET DSLVSTFQVP AESKLVSLPN KHQSRRKMNL 600 KRALLSTDIN SLNYTLANQP NKDSLSQDGL KERLSFCLSS NLARRWCSFE WFYSAIDYAW 660 FVKKEFVEYL NHVGLGHIPR LTRVEWGVIR SSLGKPRRFS ERFLHEEREK LKQYRESVRQ 720 HYAQLRIGTT EGLPTDLPQP LSIGQRVIAI HPETREVNDG KVLDLEHDSF KVQFDRPKLG 780 VELVTDIDCM PLNPLENLPE TLGSQNLAFD KFPATPNVSQ VNGHSDFRGS GVYAPSGHLE 840 NATSSVNMLA NPIKVDASRN VLNAKTSVPS VVAAHQTANG LPLTMAHIQG READIQVMSE 900 LNRALDKKEA ILMELRNTND DILDNKSGGN CLKGSEPFKK HIATVSSALH NLRQHNAYPA 960 NPVSPQQKPP TKSNFLGSLT SSIDSSLVSL ESDSVAGEIV EGSRLKAGSM VDAAIKAMSS 1020 TKEDEDPFMR IVEVLDSIDK LQFTPDIRMP VIKSAEPENG SISYQKHLVS RLPQNNEQVP 1080 SELITSCVAT LLMIRTCTER QFPPADVAQI MDLAARSLHP WCSENLWIYR EIQRCMGKIK 1140 TQILALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1150 aa Download sequence Send to blast

MAPTRKYKSV NKQYSSKCEV SPDKDAGNSR KSNPKKLFDK LGPPWSKAEI ERFYKAYREY  60
GKDWKKVAAA VRNRSTEMVE AFYIMNRAYL SLPDGVASVI GLIAMMTDHY SVLGGSDAEI  120
ESNEPSKIPR KTQKRKRVKA HFGSSKEDVF LPQSIASTQG CLSLLKRIGF NGINPHAVGR  180
RTPRVPVSYS YRRDDMENYN PPKKRVKKSE ANDNDDEHVA AVTLTGALQR GSCPQFSQRP  240
YKKAECRRSA PVQCYDRMLL QSETTKAKLP SSSSKHRIES RHGGKEPVIG TYIKDTGPTE  300
DMEGAGTVEV REKGKKVYRK KVKAGEFINN LSDDGGEACS GIEEGIIDRA VKGKVEMEIS  360
RGKSKLSPWS QRKKSKKIVS GDESASLDAL LALANLSTSI SPASIIESEV SAKFKEDRIA  420
RETDEKPSAS EAASTSHRRD ETKHIGPKEK VLNLITEAED GTSRKSKVGR YSAKDDNVVS  480
EPKQQAESTN NSKKRKSKSF STSQLQISNP EARMDSPFIQ SFDNEDMAEE MNKSLTKGSS  540
AQSSVQSQQR KSFRVPEDSL TKNDPKFAET DSLVSTFQVP AESKLVSLPN KHQSRRKMNL  600
KRALLSTDIN SLNYTLANQP NKDSLSQDGL KERLSFCLSS NLARRWCSFE WFYSAIDYAW  660
FVKKEFVEYL NHVGLGHIPR LTRVEWGVIR SSLGKPRRFS ERFLHEEREK LKQYRESVRQ  720
HYAQLRIGTT EGLPTDLPQP LSIGQRVIAI HPETREVNDG KVLDLEHDSF KVQFDRPKLG  780
VELVTDIDCM PLNPLENLPE TLGSQNLAFD KFPATPNVSQ VNGHSDFRGS GVYAPSGHLE  840
NATSSVNMLA NPIKVDASRN VLNAKTSVPS VVAAHQTANG LPLTMAHIQG READIQVMSE  900
LNRALDKKEA ILMELRNTND DILDNKSGGN CLKGSEPFKK HIATVSSALH NLRQHNAYPA  960
NPVSPQQKPP TKSNFLGSLT SSIDSSLVSL ESDSVAGEIV EGSRLKAGSM VDAAIKAMSS  1020
TKEDEDPFMR IVEVLDSIDK LQFTPDIRMP VIKSAEPENG SISYQKHLVS RLPQNNEQVP  1080
SELITSCVAT LLMIRTCTER QFPPADVAQI MDLAARSLHP WCSENLWIYR EIQRCMGKIK  1140
TQILALIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	360	373	RGKSKLSPWSQRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX576973	1e-146	JX576973.1 Gossypium hirsutum clone NBRI_GE8704 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464718.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X5
TrEMBL	A0A0D2U058	0.0	A0A0D2U058_GOSRA; Uncharacterized protein
STRING	Gorai.013G124600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-138	DNA binding

Link Out ? help Back to Top
Phytozome	Gorai.013G124600.6

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]