PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G124600.5 | ||||||||
Common Name | B456_013G124600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 1158aa MW: 128883 Da PI: 9.6994 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 45 | 85 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++ E e++++a +++G++ Wk++a+ + +R+ +++ ++ Gorai.013G124600.5 45 PWSKAEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMVEAFYI 85 8*****************99.*********.****99988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.17E-10 | 41 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.572 | 41 | 94 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-7 | 42 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 45 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-8 | 45 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.54E-7 | 45 | 84 | No hit | No description |
SMART | SM01135 | 2.8E-57 | 653 | 754 | IPR033471 | DIRP domain |
Pfam | PF06584 | 1.9E-33 | 653 | 753 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1158 aa Download sequence Send to blast |
MAPTRKYKSV NKQYSSKCEV SPDKDAGNSR KSNPKKKLFD KLGPPWSKAE IERFYKAYRE 60 YGKDWKKVAA AVRNRSTEMV EAFYIMNRAY LSLPDGVASV IGLIAMMTDH YSVLGGSDAE 120 IESNEPSKIP RKTQKRKRVK AHFGSSKEDV FLPQSIASTQ GCLSLLKRIG FNGINPHAVG 180 RRTPRVPVSY SYRRDDMENY NPPKKRVKKS EANDNDDEHV AAVTLTGALQ RGSCPQFSQR 240 PYKKAECRRS APVQCYDRML LQSETTKAKL PSSSSKHRIE SRHGGKEPVI GTYIKDTGPT 300 EDMEGAGTVE VREKGKKVYR KKVKAGEFIN NLSDDGGEAC SGIEEGIIDR AVKGKVEMEI 360 SRGKSKLSPW SQRKKSKKIV SGDESASLDA LLALANLSTS ISPASIIESE VSAKFKEDRI 420 ARETDEKPSA SEAASTSHRR DETKHIGPKE KVLNLITEAE DGTSRKSKVG RYSAKDDNVV 480 SEPKQQAEST NNSKKRKSKS FSTSQLQISN PEARMDSPFI QSFDNEDMAE EMNKSLTKGS 540 SAQSSVQSQQ RKSFRVPEDS LTKNDPKFAE TDSLVSTFQV PAESKLVSLP NKHQSRRKMN 600 LKRALLSTDI NSLNYTLANQ PNKDSLSQDG LKERLSFCLS SNLARRWCSF EWFYSAIDYA 660 WFVKKEFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKQYRESVR 720 QHYAQLRIGT TEGLPTDLPQ PLSIGQRVIA IHPETREVND GKVLDLEHDS FKVQFDRPKL 780 GVELVTDIDC MPLNPLENLP ETLGSQNLAF DKFPATPNVS QVNGHSDFRG SGVYAPSGHL 840 ENATSSVNML ANPIKVDASR NVLNAKTSVP SVVAAHQTAN GLPLTMAHIQ GREADIQVMS 900 ELNRALDKKE AILMELRNTN DDILDNKSGG NCLKGSEPFK KHIATVLVQL KEANGQVSSA 960 LHNLRQHNAY PANPVSPQQK PPTKSNFLGS LTSSIDSSLV SLESDSVAGE IVEGSRLKAG 1020 SMVDAAIKAM SSTKEDEDPF MRIVEVLDSI DKLQFTPDIR MPVIKSAEPE NGSISYQKHL 1080 VSRLPQNNEQ VPSELITSCV ATLLMIRRQF PPADVAQIMD LAARSLHPWC SENLWIYREI 1140 QRCMGKIKTQ ILALIPT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 361 | 374 | RGKSKLSPWSQRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX576973 | 1e-146 | JX576973.1 Gossypium hirsutum clone NBRI_GE8704 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464714.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 2 isoform X1 | ||||
TrEMBL | A0A0D2VED3 | 0.0 | A0A0D2VED3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G124600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 1e-140 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G124600.5 |
Publications ? help Back to Top | |||
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