PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G124600.4

Common Name

B456_013G124600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 965aa MW: 107605 Da PI: 9.84

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G124600.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.2	1e-09	45	85	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++ E e++++a +++G++ Wk++a+ + +R+ +++ ++ Gorai.013G124600.4 45 PWSKAEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMVEAFYI 85 8***************99.*****.**99988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.72E-10	41	89	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.572	41	94	IPR017884	SANT domain
SMART	SM00717	1.7E-7	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-6	45	84	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-8	45	86	IPR001005	SANT/Myb domain
CDD	cd00167	8.66E-7	45	84	No hit	No description
Pfam	PF06584	1.5E-33	653	753	IPR033471	DIRP domain
SMART	SM01135	2.8E-57	653	754	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MAPTRKYKSV NKQYSSKCEV SPDKDAGNSR KSNPKKKLFD KLGPPWSKAE IERFYKAYRE 60 YGKDWKKVAA AVRNRSTEMV EAFYIMNRAY LSLPDGVASV IGLIAMMTDH YSVLGGSDAE 120 IESNEPSKIP RKTQKRKRVK AHFGSSKEDV FLPQSIASTQ GCLSLLKRIG FNGINPHAVG 180 RRTPRVPVSY SYRRDDMENY NPPKKRVKKS EANDNDDEHV AAVTLTGALQ RGSCPQFSQR 240 PYKKAECRRS APVQCYDRML LQSETTKAKL PSSSSKHRIE SRHGGKEPVI GTYIKDTGPT 300 EDMEGAGTVE VREKGKKVYR KKVKAGEFIN NLSDDGGEAC SGIEEGIIDR AVKGKVEMEI 360 SRGKSKLSPW SQRKKSKKIV SGDESASLDA LLALANLSTS ISPASIIESE VSAKFKEDRI 420 ARETDEKPSA SEAASTSHRR DETKHIGPKE KVLNLITEAE DGTSRKSKVG RYSAKDDNVV 480 SEPKQQAEST NNSKKRKSKS FSTSQLQISN PEARMDSPFI QSFDNEDMAE EMNKSLTKGS 540 SAQSSVQSQQ RKSFRVPEDS LTKNDPKFAE TDSLVSTFQV PAESKLVSLP NKHQSRRKMN 600 LKRALLSTDI NSLNYTLANQ PNKDSLSQDG LKERLSFCLS SNLARRWCSF EWFYSAIDYA 660 WFVKKEFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKQYRESVR 720 QHYAQLRIGT TEGLPTDLPQ PLSIGQRVIA IHPETREVND GKVLDLEHDS FKVQFDRPKL 780 GVELVTDIDC MPLNPLENLP ETLGSQNLAF DKFPATPNVS QVNGHSDFRG SGVYAPSGHL 840 ENATSSVNML ANPIKVDASR NVLNAKTSVP SVVAAHQTAN GLPLTMAHIQ GREADIQVMS 900 ELNRALDKKE AILMELRNTN DDILDNKSGG NCLKGSEPFK KHIATVLVQL KEANGQACGF 960 YELM*

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MAPTRKYKSV NKQYSSKCEV SPDKDAGNSR KSNPKKKLFD KLGPPWSKAE IERFYKAYRE  60
YGKDWKKVAA AVRNRSTEMV EAFYIMNRAY LSLPDGVASV IGLIAMMTDH YSVLGGSDAE  120
IESNEPSKIP RKTQKRKRVK AHFGSSKEDV FLPQSIASTQ GCLSLLKRIG FNGINPHAVG  180
RRTPRVPVSY SYRRDDMENY NPPKKRVKKS EANDNDDEHV AAVTLTGALQ RGSCPQFSQR  240
PYKKAECRRS APVQCYDRML LQSETTKAKL PSSSSKHRIE SRHGGKEPVI GTYIKDTGPT  300
EDMEGAGTVE VREKGKKVYR KKVKAGEFIN NLSDDGGEAC SGIEEGIIDR AVKGKVEMEI  360
SRGKSKLSPW SQRKKSKKIV SGDESASLDA LLALANLSTS ISPASIIESE VSAKFKEDRI  420
ARETDEKPSA SEAASTSHRR DETKHIGPKE KVLNLITEAE DGTSRKSKVG RYSAKDDNVV  480
SEPKQQAEST NNSKKRKSKS FSTSQLQISN PEARMDSPFI QSFDNEDMAE EMNKSLTKGS  540
SAQSSVQSQQ RKSFRVPEDS LTKNDPKFAE TDSLVSTFQV PAESKLVSLP NKHQSRRKMN  600
LKRALLSTDI NSLNYTLANQ PNKDSLSQDG LKERLSFCLS SNLARRWCSF EWFYSAIDYA  660
WFVKKEFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKQYRESVR  720
QHYAQLRIGT TEGLPTDLPQ PLSIGQRVIA IHPETREVND GKVLDLEHDS FKVQFDRPKL  780
GVELVTDIDC MPLNPLENLP ETLGSQNLAF DKFPATPNVS QVNGHSDFRG SGVYAPSGHL  840
ENATSSVNML ANPIKVDASR NVLNAKTSVP SVVAAHQTAN GLPLTMAHIQ GREADIQVMS  900
ELNRALDKKE AILMELRNTN DDILDNKSGG NCLKGSEPFK KHIATVLVQL KEANGQACGF  960
YELM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	374	RGKSKLSPWSQRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX576973	1e-146	JX576973.1 Gossypium hirsutum clone NBRI_GE8704 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464714.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X1
TrEMBL	A0A0D2SCV4	0.0	A0A0D2SCV4_GOSRA; Uncharacterized protein
STRING	Gorai.013G124600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	9e-98	DNA binding

Link Out ? help Back to Top
Phytozome	Gorai.013G124600.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]