PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G122900.1
Common NameB456_013G122900, LOC105783026
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 376aa    MW: 41369.6 Da    PI: 8.1731
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G122900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.9e-344599155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprl+Wtp+LHerF+eav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl
  Gorai.013G122900.1 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRL 99
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.90442102IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-3143100IPR009057Homeodomain-like
SuperFamilySSF466898.78E-1744101IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-2345100IPR006447Myb domain, plants
PfamPF002491.2E-94798IPR001005SANT/Myb domain
PfamPF143791.0E-24146191IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MYHHHHHQGK NIQACLRTAI PDRHLLLQGG NGTGDSGLVL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKTVMKIM GIPGLTLYHL KSHLQKYRLS KNPHGQANNG SNKIGAVAMP  120
ADKMSEANGI QMNNSTVGPQ TNRGLQIGEA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQSVLEKAQ ESLGRQNPGS MGLEAAQLQL SELVSKVSNQ CLDSTLMDLK ELQGLCHQKT  240
KTNSIDSCLT SIEGSQKDQE IHNNGICLRP YSLVAEDPWL PQTGLKENKM VPSSTGKIAD  300
RSSNGSDLSI TVGLQGDKGK GFNSNSSRFS ERKFNGRNEE DGLHFFATKL DLNVDEENDV  360
ASRCKQFDLN GLSWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-2245101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-2245101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-2245101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-2245101157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5873153e-80JX587315.1 Gossypium hirsutum clone NBRI_GE21375 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463645.10.0PREDICTED: uncharacterized protein LOC105783026
SwissprotQ9SQQ91e-137PHL9_ARATH; Myb-related protein 2
TrEMBLA0A0D2VE810.0A0A0D2VE81_GOSRA; Uncharacterized protein
STRINGGorai.013G122900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-140G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]