PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G121300.5

Common Name

B456_013G121300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 478aa MW: 52357.7 Da PI: 7.8495

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G121300.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.9	6.4e-16	193	230	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk Gorai.013G121300.5 193 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 230 79**********************************96 PP
2	TCR	53	7e-17	277	316	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCk+s+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ Gorai.013G121300.5 277 RHKRGCNCKRSSCLKKYCECFQAGVGCSLSCRCEGCKNSF 316 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.2E-17	191	232	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.47	192	317	IPR005172	CRC domain
Pfam	PF03638	3.0E-11	194	229	IPR005172	CRC domain
SMART	SM01114	1.2E-17	277	318	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.3E-12	279	315	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MLTMNSSIIH ENTDWQDWRT TNSGTTSFIS NILQFPLDKA NNSENAESGD PSGSCKQSKS 60 GEPVMDQMHG ILSTCLPDEL VVNDSGLKKD DKEGNCNQSN HQFSIRRRCL VFEKSPGFGL 120 HLNSLPNIPK GQSPLSKSTL SSMNRGEVPD DNKGVVTENS YEMPATFGGN EADHNSPEKK 180 RQKFELVEES VACKRCNCKR SKCLKLYCDC FAAGLYCIEP CSCQDCFNKP IHENVVLETR 240 RQIESRNPLA FAPKVIRTTN GVSDSMGEIN KTPASARHKR GCNCKRSSCL KKYCECFQAG 300 VGCSLSCRCE GCKNSFGRKD GGCESESDGD NLEACEKNAS EKSSHDTVIS KGQEHPNLSV 360 PSPDISRLPF AYTGKLAAFF PHSIKSSPQL CSTQEQGSSD TSSCKPKLES NLDGIPENGT 420 PEIPKHKCFT LVSNPTSPNC KRVFSTPNHD STSSSTKWRS RKLILRSVPS FPSFSPP*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MLTMNSSIIH ENTDWQDWRT TNSGTTSFIS NILQFPLDKA NNSENAESGD PSGSCKQSKS  60
GEPVMDQMHG ILSTCLPDEL VVNDSGLKKD DKEGNCNQSN HQFSIRRRCL VFEKSPGFGL  120
HLNSLPNIPK GQSPLSKSTL SSMNRGEVPD DNKGVVTENS YEMPATFGGN EADHNSPEKK  180
RQKFELVEES VACKRCNCKR SKCLKLYCDC FAAGLYCIEP CSCQDCFNKP IHENVVLETR  240
RQIESRNPLA FAPKVIRTTN GVSDSMGEIN KTPASARHKR GCNCKRSSCL KKYCECFQAG  300
VGCSLSCRCE GCKNSFGRKD GGCESESDGD NLEACEKNAS EKSSHDTVIS KGQEHPNLSV  360
PSPDISRLPF AYTGKLAAFF PHSIKSSPQL CSTQEQGSSD TSSCKPKLES NLDGIPENGT  420
PEIPKHKCFT LVSNPTSPNC KRVFSTPNHD STSSSTKWRS RKLILRSVPS FPSFSPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-20	194	314	12	120	Protein lin-54 homolog
5fd3_B	4e-20	194	314	12	120	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	2e-33	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	2e-33	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464781.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 3 isoform X4
TrEMBL	A0A0D2VCQ4	0.0	A0A0D2VCQ4_GOSRA; Uncharacterized protein
STRING	Gorai.013G121300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	3e-77	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Gorai.013G121300.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]