PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.013G121300.4 | ||||||||
Common Name | B456_013G121300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 478aa MW: 52428.8 Da PI: 7.8495 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.9 | 6.4e-16 | 194 | 231 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk Gorai.013G121300.4 194 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 231 79**********************************96 PP | |||||||
2 | TCR | 53 | 7e-17 | 278 | 317 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCk+s+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ Gorai.013G121300.4 278 RHKRGCNCKRSSCLKKYCECFQAGVGCSLSCRCEGCKNSF 317 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.2E-17 | 192 | 233 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.47 | 193 | 318 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.0E-11 | 195 | 230 | IPR005172 | CRC domain |
SMART | SM01114 | 1.2E-17 | 278 | 319 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 280 | 316 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence Send to blast |
MLTMNSSIIH ENTDWQDWRT TNSGTTSFIS NILQFPLDKA NNSENAESGD PSGSCKQSKS 60 GEPVMDQMHG ILSTCLPDEL VVNDSGLKKD DKEGNCNQSN HQQFSIRRRC LVFEKSPGFG 120 LHLNSLPNIP KGQSPLSKST LSSMNRGEVP DDNKGVVTEN SYEMPATFGG NEADHNSPEK 180 KRQKFELVEE SVACKRCNCK RSKCLKLYCD CFAAGLYCIE PCSCQDCFNK PIHENVVLET 240 RRQIESRNPL AFAPKVIRTT NGVSDSMGEI NKTPASARHK RGCNCKRSSC LKKYCECFQA 300 GVGCSLSCRC EGCKNSFGRK DGCESESDGD NLEACEKNAS EKSSHDTVIS KGQEHPNLSV 360 PSPDISRLPF AYTGKLAAFF PHSIKSSPQL CSTQEQGSSD TSSCKPKLES NLDGIPENGT 420 PEIPKHKCFT LVSNPTSPNC KRVFSTPNHD STSSSTKWRS RKLILRSVPS FPSFSPP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-20 | 195 | 315 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 4e-20 | 195 | 315 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 2e-33 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 2e-33 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464781.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 3 isoform X4 | ||||
TrEMBL | A0A0D2SCM8 | 0.0 | A0A0D2SCM8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G121300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22760.1 | 2e-78 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.013G121300.4 |
Publications ? help Back to Top | |||
---|---|---|---|
|