PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G121300.3
Common NameB456_013G121300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 479aa    MW: 52485.8 Da    PI: 7.8495
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G121300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.96.4e-16194231340
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         +k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk 
  Gorai.013G121300.3 194 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 231
                         79**********************************96 PP

2TCR537e-17278317140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+gCnCk+s+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ 
  Gorai.013G121300.3 278 RHKRGCNCKRSSCLKKYCECFQAGVGCSLSCRCEGCKNSF 317
                         589***********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-17192233IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.47193318IPR005172CRC domain
PfamPF036383.0E-11195230IPR005172CRC domain
SMARTSM011141.2E-17278319IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12280316IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MLTMNSSIIH ENTDWQDWRT TNSGTTSFIS NILQFPLDKA NNSENAESGD PSGSCKQSKS  60
GEPVMDQMHG ILSTCLPDEL VVNDSGLKKD DKEGNCNQSN HQQFSIRRRC LVFEKSPGFG  120
LHLNSLPNIP KGQSPLSKST LSSMNRGEVP DDNKGVVTEN SYEMPATFGG NEADHNSPEK  180
KRQKFELVEE SVACKRCNCK RSKCLKLYCD CFAAGLYCIE PCSCQDCFNK PIHENVVLET  240
RRQIESRNPL AFAPKVIRTT NGVSDSMGEI NKTPASARHK RGCNCKRSSC LKKYCECFQA  300
GVGCSLSCRC EGCKNSFGRK DGGCESESDG DNLEACEKNA SEKSSHDTVI SKGQEHPNLS  360
VPSPDISRLP FAYTGKLAAF FPHSIKSSPQ LCSTQEQGSS DTSSCKPKLE SNLDGIPENG  420
TPEIPKHKCF TLVSNPTSPN CKRVFSTPNH DSTSSSTKWR SRKLILRSVP SFPSFSPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-2019531512120Protein lin-54 homolog
5fd3_B4e-2019531512120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818422e-33LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132592e-33LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464781.10.0PREDICTED: protein tesmin/TSO1-like CXC 3 isoform X4
TrEMBLA0A0D2TZW40.0A0A0D2TZW4_GOSRA; Uncharacterized protein
STRINGGorai.013G121300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-77TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]