PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G121300.2
Common NameB456_013G121300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 670aa    MW: 74060.5 Da    PI: 7.3023
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G121300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.39.7e-16383420340
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         +k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk 
  Gorai.013G121300.2 383 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 420
                         79**********************************96 PP
2TCR52.41.1e-16469508140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+gCnCk+s+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ 
  Gorai.013G121300.2 469 RHKRGCNCKRSSCLKKYCECFQAGVGCSLSCRCEGCKNSF 508
                         589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-17381422IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.442382509IPR005172CRC domain
PfamPF036384.6E-11384419IPR005172CRC domain
SMARTSM011141.2E-17469510IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.0E-12471507IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MDTPDKTQIT PTSNLCKFED SPVFKYIDSL SPIELAKSRQ TDNGFSSLAF LSPSSLFPSP  60
QITCHRESRF SVKRHHFLEP LNSRVARSGH ESNTSEGASK VDEHLGCLNN DSSYKETSSD  120
QVDEQPNLAT DLPRTLKYDC RSPDGDFEPC DEILKKTNVE VAGQERSPFQ CNRDKWEERQ  180
QSFQNERNLR KICGIKRSEE SAGSDWDWRT TNSGTTSFIS NILQFPLDKA NNSENAESGD  240
PSGSCKQSKS GEPVMDQMHG ILSTCLPDEL VVNDSGLKKD DKEGNCNQSN HQFSIRRRCL  300
VFEKSPGFGL HLNSLPNIPK GQSPLSKSTL SSMNRGEVPD DNKGVVTENS YEMPATFGGN  360
EADHNSPEKK RQKFELVEES VACKRCNCKR SKCLKLYCDC FAAGLYCIEP CSCQDCFNKP  420
IHENVVLETR RQIESRNPLA FAPKVIRTTN GVSDSMVQGE INKTPASARH KRGCNCKRSS  480
CLKKYCECFQ AGVGCSLSCR CEGCKNSFGR KDGGCESESD GDNLEACEKN ASEKSSHDTV  540
ISKGQEHPNL SVPSPDISRL PFAYTGKLAA FFPHSIKSSP QLCSTQEQGS SDTSSCKPKL  600
ESNLDGIPEN GTPEIPKHKC FTLVSNPTSP NCKRVFSTPN HDSTSSSTKW RSRKLILRSV  660
PSFPSFSPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1938450612120Protein lin-54 homolog
5fd3_B1e-1938450612120Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818422e-33LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132592e-33LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464782.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X5
TrEMBLA0A0D2W5A00.0A0A0D2W5A0_GOSRA; Uncharacterized protein
STRINGGorai.013G121300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.15e-86Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]