PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G118300.3

Common Name

B456_013G118300, LOC105783759

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 174aa MW: 19693.1 Da PI: 6.5121

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G118300.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46	1.2e-14	33	77	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ +eE l+++++ +lG++ W++Ia +++ gRt++++k++w+ + Gorai.013G118300.3 33 RGSFAAEEVNLIINLHSLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 77 78999***************.*****.*********977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.13E-20	10	89	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-9	14	39	IPR009057	Homeodomain-like
PROSITE profile	PS50090	3.938	14	27	IPR017877	Myb-like domain
PROSITE profile	PS51294	24.072	28	82	IPR017930	Myb domain
SMART	SM00717	8.7E-14	32	80	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-13	33	75	IPR001005	SANT/Myb domain
CDD	cd00167	1.13E-9	38	78	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-19	40	78	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MEKGSGIEYL FWLRCRKSCR LRWLNYLRPN IKRGSFAAEE VNLIINLHSL LGNRWSLIAG 60 RLPGRTANDV KNYWNCHLSK KLNSAPQSED DQTAAATTTA SMKPRRPAHV SPNTQQETSV 120 WAPFHDVQVN QQGQEVAAEE PVTLVGDLEF DEGGSSKWWD DFIFDMDLWT ASL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-17	14	84	40	110	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464852.1	1e-128	PREDICTED: transcription factor MYB113-like isoform X2
TrEMBL	A0A0D2TZP2	1e-127	A0A0D2TZP2_GOSRA; Uncharacterized protein
STRING	Gorai.013G118300.1	1e-116	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	1e-36	myb domain protein 113

Link Out ? help Back to Top
Phytozome	Gorai.013G118300.3
Entrez Gene	105783759

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]