PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G118300.2 | ||||||||
Common Name | B456_013G118300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 21513.2 Da PI: 6.6705 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 5 | 50 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++++++G g W++I+ g++R++k+c++rw++yl Gorai.013G118300.2 5 AWTEEEDYLLKKCIERYGEGKWHRIPVLAGLKRCRKSCRLRWLNYL 50 7*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.192 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-13 | 2 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.8E-21 | 5 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-21 | 5 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.0E-15 | 5 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.76E-11 | 5 | 50 | No hit | No description |
PROSITE profile | PS51294 | 11.731 | 55 | 98 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-4 | 55 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-14 | 58 | 99 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGGVAWTEEE DYLLKKCIER YGEGKWHRIP VLAGLKRCRK SCRLRWLNYL RPNIKRGSFA 60 AEEVNLIINL HSLLGNRLPG RTANDVKNYW NCHLSKKLNS APQSEDDQTA AATTTASMKP 120 RRPAHVSPNT QQETSVWAPF HDVQVNQQGQ EVAAEEPVTL VGDLEFDEGG SSKWWDDFIF 180 DMDLWTASL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-17 | 6 | 100 | 10 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012464849.1 | 1e-132 | PREDICTED: transcription factor MYB114-like isoform X1 | ||||
Swissprot | Q9FNV9 | 7e-46 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A0D2VDY3 | 1e-140 | A0A0D2VDY3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G118300.1 | 1e-131 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-46 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G118300.2 |
Publications ? help Back to Top | |||
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