PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G118300.1
Common NameB456_013G118300, LOC105783759
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 197aa    MW: 22297.2 Da    PI: 7.0307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G118300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-16550348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +WT+eEd ll+++++++G g W++I+   g++R++k+c++rw++yl
  Gorai.013G118300.1  5 AWTEEEDYLLKKCIERYGEGKWHRIPVLAGLKRCRKSCRLRWLNYL 50
                        7*******************************************97 PP
2Myb_DNA-binding45.71.5e-1456100147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++ +eE  l+++++ +lG++ W++Ia +++ gRt++++k++w+ +
  Gorai.013G118300.1  56 RGSFAAEEVNLIINLHSLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100
                         78999*****************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.888150IPR017930Myb domain
SMARTSM007173.5E-13252IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-27597IPR009057Homeodomain-like
PfamPF002496.4E-15550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-21557IPR009057Homeodomain-like
CDDcd001678.98E-11550No hitNo description
PROSITE profilePS5129424.07251105IPR017930Myb domain
SMARTSM007178.7E-1455103IPR001005SANT/Myb domain
PfamPF002498.9E-135698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2358106IPR009057Homeodomain-like
CDDcd001672.46E-961101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGGVAWTEEE DYLLKKCIER YGEGKWHRIP VLAGLKRCRK SCRLRWLNYL RPNIKRGSFA  60
AEEVNLIINL HSLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNSAPQ SEDDQTAAAT  120
TTASMKPRRP AHVSPNTQQE TSVWAPFHDV QVNQQGQEVA AEEPVTLVGD LEFDEGGSSK  180
WWDDFIFDMD LWTASL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22610710110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464849.11e-146PREDICTED: transcription factor MYB114-like isoform X1
SwissprotQ9FNV94e-54MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0D2SCI41e-145A0A0D2SCI4_GOSRA; Uncharacterized protein
STRINGGorai.013G118300.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17352611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-55myb domain protein 113
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]