PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G114900.1
Common NameB456_013G114900, LOC105783950
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 277aa    MW: 31025.6 Da    PI: 6.3462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G114900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-172673148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde l++++k  Ggg+W+t +++ g+ R++k+c++rw +yl
  Gorai.013G114900.1 26 KGPWTAEEDEVLANYIKIEGGGRWRTLPKRAGLLRCGKSCRLRWMNYL 73
                        79******************************99************97 PP
2Myb_DNA-binding47.63.9e-1579124148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Gorai.013G114900.1  79 RGPIAPDEEDLILRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTHL 124
                         566679****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.982173IPR017930Myb domain
SuperFamilySSF466891.39E-2823120IPR009057Homeodomain-like
SMARTSM007171.8E-112575IPR001005SANT/Myb domain
PfamPF002495.1E-142673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-212780IPR009057Homeodomain-like
CDDcd001677.05E-102873No hitNo description
PROSITE profilePS5129424.15774128IPR017930Myb domain
SMARTSM007172.4E-1478126IPR001005SANT/Myb domain
PfamPF002495.1E-1480124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2481129IPR009057Homeodomain-like
CDDcd001671.27E-1184124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKKPILLGTS TATSRTPCCS KVGIKKGPWT AEEDEVLANY IKIEGGGRWR TLPKRAGLLR  60
CGKSCRLRWM NYLRPTVKRG PIAPDEEDLI LRLHRLLGNR WALIAGRIPG RTDNEIKNYW  120
NTHLSKNLIS QGIDPRTHKP LSPVSHGSSQ ANQDDDDDVP ESNPNPPSSF KSSELMGEKT  180
NSMETTNLES HQIYQHQQEV GDDCMGQPSS SGNGGDLVEN GNEDHMFSLF LDSLITDNQQ  240
QQQQSNNGEL WEAEIMSPMV EFGNPQNYFN HHQQHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24261287108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465121.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388501e-75MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0D2VDR90.0A0A0D2VDR9_GOSRA; Uncharacterized protein
STRINGGorai.013G114900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-77myb domain protein 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]