PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G110900.6
Common NameB456_013G110900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 699aa    MW: 76025.4 Da    PI: 7.2265
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G110900.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.72.7e-14519557341
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         +k+CnCkk+kClk+YC+Cfaag +C+e C+C++C+N+ e
  Gorai.013G110900.6 519 CKRCNCKKTKCLKLYCDCFAAGIYCAEPCSCQGCFNRPE 557
                         89**********************************876 PP
2TCR48.32e-15605643139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCk+s ClkkYCeC++a++ Cs  C+Ce+CkN 
  Gorai.013G110900.6 605 RHKRGCNCKRSMCLKKYCECYQANVGCSIGCRCEGCKNV 643
                         589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.1E-14517558IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.545518645IPR005172CRC domain
PfamPF036382.0E-11520555IPR005172CRC domain
SMARTSM011143.8E-17605646IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.7E-11607642IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MDSPKLSKSP IPSASASASA SISSSSSPVQ ESPFSNYISS LSPIKHDKAL HVAQGFVGLS  60
SPPLVFTSPR INTLGRPQSS SVKISQKGVG DKKIINESCI LERSVTESQE GLVTDIKNED  120
IKDDVAVQLG SSSECVDEYL ADPVETDCAK SAYSDKLNLK QSNNVLQSSV NGLLDLKNMK  180
FGRKNNVGRE VDAAQFLSGR SEESIERKLT SDEKLLKIED EQGSAQGISD GFQKFDSDRF  240
DLSSKEKECK NFGPQKDGHG DGCSNFLQQL PGSLPGVQSY EGFAKNIGGD ADAPVHSMTH  300
EASELQRSMS RRCLQFGEAQ PEATATCSIS TNRANNIISS TSLATNSETE SLSSSHLDLS  360
AKSRTRQLVN LSQLAMNMIP QCYGKSSLSV LKPSGIGLHL NSIVNAISMG QGGTASMKVA  420
QAIKSTSTTS CQSTENIDNC SDAFEKVSTP QGALEQKVCT IAGSASESLF AEESVEFHMT  480
PNIKRKFSSE DGDRNDMFDQ QRPIKKRQKL SNNTDGDCCK RCNCKKTKCL KLYCDCFAAG  540
IYCAEPCSCQ GCFNRPEYEE TVLETRKQIE SRNPLAFAPK IVQPVTEFPL SNREDGNRKT  600
PSSARHKRGC NCKRSMCLKK YCECYQANVG CSIGCRCEGC KNVYGKKEDY CVTKEMVNRS  660
GEISESRVAA KPKKEIFHSE LCDPYHLTPL TPLVQCSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1852064312121Protein lin-54 homolog
5fd3_B2e-1852064312121Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9082323e-54DQ908232.1 Gossypium hirsutum clone LIB5327-014-A1-N1-A9_Gh292 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464904.10.0PREDICTED: CRC domain-containing protein TSO1-like isoform X2
TrEMBLA0A0D2W4Y50.0A0A0D2W4Y5_GOSRA; Uncharacterized protein
STRINGGorai.013G110900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.16e-47Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]